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The map label for this gene is yybE [H]

Identifier: 162147784

GI number: 162147784

Start: 2035618

End: 2036544

Strand: Reverse

Name: yybE [H]

Synonym: GDI_2000

Alternate gene names: 162147784

Gene position: 2036544-2035618 (Counterclockwise)

Preceding gene: 162147785

Following gene: 162147783

Centisome position: 51.63

GC content: 69.69

Gene sequence:

>927_bases
ATGAGGGCATCGGGCCGGACCGCGCATATGTTGCGGCTGCATGCGCGCTGCATCGTGTATTTCAACGCGGTGCGCGATTT
CGGGTCGATCCGCGAGGCCGCGCGCCGCCTGAACGTCACCCCGTCCGCCCTGACGCGCCAGATCGCGCAGATGGAGGACG
AAATCGGGTCGCCGCTGTTCGACCGGCTGCCGGGCGGCATGGTGCTGACGGCGGTGGGCGAAATCGTCGCCCGCCATATC
ATCACCGTCATGCAGGACGCCGTGCGCACGGACGAGCAGATCGCGGCCCTGGCCGGCATGCGCGGCGGACGCGTCAGCCT
GATGGCGGTCGAAGGCGTCGCGGGCGACCTGATGGCCCGCCTGCTGACGCGCATGACCGAAACCTGTCCGGACGTCCAGT
TGCAGGCGGAAACCGGCTCGCCCGCCGCCATCATCGCGGCCCTGTCCGGGGGCACCACCGACCTGGGCATCGCCTTTTCG
CTGGACCCGCCGGATGAACTGCGCCGGGTCGCGGTCGCGAATTTCCCGGTCGGCGTCATCATGCCCGCCAACCATGCGCT
GGCCGGCCAGCGCCGCGTGCGGATCGAGGAGTGCATCGGCCACAAGCTGATCCTGCCCACCCGGTCGCTGTCGCTCCACC
GGGTCATGGAACCCATGCTGCGACCCTGGCGCGACCGGCTGGACGTGGTGCTGGAAACCGGGTCCATCGAACTGACCAAC
CGCATGGTGGCGGCCGGGGCGGGGCTGGCGTTCCAGTCCCGGCTGGCGCTGGAATTCGACATCCAGCGCGGCGCCCTGGT
CCATGTGCCGCTGGCCGATCCGCGTGCCGTGACCGACCTGGGCGTCTATGTCCGCGATGCCCGCTGGCTGCCGCCCGCGC
TTGAACGGCTGATCGCCGAAATACGGGCAACGCTGCAGGCGATGTAA

Upstream 100 bases:

>100_bases
CCGCCCTGGTCGCCGCCGAAATTGTGGAACGATTGTTGCATGACAATGCCGGAATGGAAGAGAGCAACGGGGCGGAAGGG
ATCGGCATGAGGCATACGGC

Downstream 100 bases:

>100_bases
GTGGCTCTATCCGTTCCTGTTTCAGCAACGGATTGGTCTTTTTATTATACTGGACGAAACACCGGGCGATCCGGTTAGTT
TCGGTTCCGGGATGGTGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRASGRTAHMLRLHARCIVYFNAVRDFGSIREAARRLNVTPSALTRQIAQMEDEIGSPLFDRLPGGMVLTAVGEIVARHI
ITVMQDAVRTDEQIAALAGMRGGRVSLMAVEGVAGDLMARLLTRMTETCPDVQLQAETGSPAAIIAALSGGTTDLGIAFS
LDPPDELRRVAVANFPVGVIMPANHALAGQRRVRIEECIGHKLILPTRSLSLHRVMEPMLRPWRDRLDVVLETGSIELTN
RMVAAGAGLAFQSRLALEFDIQRGALVHVPLADPRAVTDLGVYVRDARWLPPALERLIAEIRATLQAM

Sequences:

>Translated_308_residues
MRASGRTAHMLRLHARCIVYFNAVRDFGSIREAARRLNVTPSALTRQIAQMEDEIGSPLFDRLPGGMVLTAVGEIVARHI
ITVMQDAVRTDEQIAALAGMRGGRVSLMAVEGVAGDLMARLLTRMTETCPDVQLQAETGSPAAIIAALSGGTTDLGIAFS
LDPPDELRRVAVANFPVGVIMPANHALAGQRRVRIEECIGHKLILPTRSLSLHRVMEPMLRPWRDRLDVVLETGSIELTN
RMVAAGAGLAFQSRLALEFDIQRGALVHVPLADPRAVTDLGVYVRDARWLPPALERLIAEIRATLQAM
>Mature_308_residues
MRASGRTAHMLRLHARCIVYFNAVRDFGSIREAARRLNVTPSALTRQIAQMEDEIGSPLFDRLPGGMVLTAVGEIVARHI
ITVMQDAVRTDEQIAALAGMRGGRVSLMAVEGVAGDLMARLLTRMTETCPDVQLQAETGSPAAIIAALSGGTTDLGIAFS
LDPPDELRRVAVANFPVGVIMPANHALAGQRRVRIEECIGHKLILPTRSLSLHRVMEPMLRPWRDRLDVVLETGSIELTN
RMVAAGAGLAFQSRLALEFDIQRGALVHVPLADPRAVTDLGVYVRDARWLPPALERLIAEIRATLQAM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=282, Percent_Identity=26.5957446808511, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=27.7533039647577, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=295, Percent_Identity=23.0508474576271, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790399, Length=292, Percent_Identity=22.2602739726027, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787879, Length=278, Percent_Identity=25.1798561151079, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787601, Length=293, Percent_Identity=24.2320819112628, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789204, Length=241, Percent_Identity=24.0663900414938, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33526; Mature: 33526

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASGRTAHMLRLHARCIVYFNAVRDFGSIREAARRLNVTPSALTRQIAQMEDEIGSPLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH
DRLPGGMVLTAVGEIVARHIITVMQDAVRTDEQIAALAGMRGGRVSLMAVEGVAGDLMAR
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHH
LLTRMTETCPDVQLQAETGSPAAIIAALSGGTTDLGIAFSLDPPDELRRVAVANFPVGVI
HHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
MPANHALAGQRRVRIEECIGHKLILPTRSLSLHRVMEPMLRPWRDRLDVVLETGSIELTN
ECCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCCEEEHH
RMVAAGAGLAFQSRLALEFDIQRGALVHVPLADPRAVTDLGVYVRDARWLPPALERLIAE
HHHHHCCCHHHHCCEEEEEEECCCCEEEEECCCCCHHHHHHHHEECCCCCCHHHHHHHHH
IRATLQAM
HHHHHHCC
>Mature Secondary Structure
MRASGRTAHMLRLHARCIVYFNAVRDFGSIREAARRLNVTPSALTRQIAQMEDEIGSPLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH
DRLPGGMVLTAVGEIVARHIITVMQDAVRTDEQIAALAGMRGGRVSLMAVEGVAGDLMAR
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCHHHHHHHH
LLTRMTETCPDVQLQAETGSPAAIIAALSGGTTDLGIAFSLDPPDELRRVAVANFPVGVI
HHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHCCCCEEEE
MPANHALAGQRRVRIEECIGHKLILPTRSLSLHRVMEPMLRPWRDRLDVVLETGSIELTN
ECCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCCEEEHH
RMVAAGAGLAFQSRLALEFDIQRGALVHVPLADPRAVTDLGVYVRDARWLPPALERLIAE
HHHHHCCCHHHHCCEEEEEEECCCCEEEEECCCCCHHHHHHHHEECCCCCCHHHHHHHHH
IRATLQAM
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]