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The map label for this gene is radC [C]

Identifier: 162147771

GI number: 162147771

Start: 2019336

End: 2020070

Strand: Reverse

Name: radC [C]

Synonym: GDI_1987

Alternate gene names: 162147771

Gene position: 2020070-2019336 (Counterclockwise)

Preceding gene: 162147776

Following gene: 162147769

Centisome position: 51.22

GC content: 70.48

Gene sequence:

>735_bases
ATGACACGGACGGGCGGGGATGGGGGGAAAGCCCCCCGACAGAGTGCCCCGTTCAAGGAGACCGGCCCCACCGGGCACCG
CGCCCGGATGCGCGCGCGCGTGCTGGCATCGGGCGCCGGGTCGCTGGCCGATTACGAAATTATTGAAATGCTGCTGTTTT
CCGGCGTGCCGCGCCGCGATACCAAGCCGATGGCCAAGGCGCTGCTGAACCGGTTCGGCAGCCTGGGCGCCCTGCTGTCG
GCGCCGGCCGATGCCCTGCGCGCGGCGGGCCTGTCGGACCGGGTGGCGCTGCCGCTGATGCTGCCGGCCAGCGTGGCCGA
GCGTCTGTCGCGCCCCGACCCGCTGACGCGCACGCCCATGCGCGACTGGGATGCCGTGCTGGCCTATTGCGACACGGTCC
TGACCGGCGCACCGCCCGGCCAGTTGCGGATTCTCTTCCTCGACAGCAGCAACCACATCATCGCCGACGAAGCCCTGGAC
GCCGCGCTGGATACGGGGGAACTGGACCTGGTGCAGCGCCATATCCTGCTGCGCGCGCTCGACCTGCACGCCACCGCCTT
CGTCGGCATCCGCATCGCCCCGGTCTGGCCGCCCCCCGCGGCGCTGGTCGAGCGTGACGCCGTGCTGATGCAGGCTATTT
CCTACCATGCGCAGAACCTGTCCCTGACGGTGCAGGACCACCTGATCCTGCACCATGGCCAGTGGCTCAGCCTGCGGCAG
CAGCGGCGGCTATAG

Upstream 100 bases:

>100_bases
ACGATTTCCGTATAGGGCGTCCGGAGATTATGACCAAGCTTATGCGCGCGCATTCGCGCGGGCAGGCGGGTCTGTGGCCA
GGCGTGAAAGAGAGGATGGA

Downstream 100 bases:

>100_bases
GATGGCCGTCATTCCGCAGCGGGGTGCAGGTGCGCCGCCGCAAGCTGGCTGCGGATCGCGGCCAGAAGCTCGCCGGGATC
GGCCACCAGGGCATCCGCCC

Product: DNA repair protein radC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTRTGGDGGKAPRQSAPFKETGPTGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRDTKPMAKALLNRFGSLGALLS
APADALRAAGLSDRVALPLMLPASVAERLSRPDPLTRTPMRDWDAVLAYCDTVLTGAPPGQLRILFLDSSNHIIADEALD
AALDTGELDLVQRHILLRALDLHATAFVGIRIAPVWPPPAALVERDAVLMQAISYHAQNLSLTVQDHLILHHGQWLSLRQ
QRRL

Sequences:

>Translated_244_residues
MTRTGGDGGKAPRQSAPFKETGPTGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRDTKPMAKALLNRFGSLGALLS
APADALRAAGLSDRVALPLMLPASVAERLSRPDPLTRTPMRDWDAVLAYCDTVLTGAPPGQLRILFLDSSNHIIADEALD
AALDTGELDLVQRHILLRALDLHATAFVGIRIAPVWPPPAALVERDAVLMQAISYHAQNLSLTVQDHLILHHGQWLSLRQ
QRRL
>Mature_243_residues
TRTGGDGGKAPRQSAPFKETGPTGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRDTKPMAKALLNRFGSLGALLSA
PADALRAAGLSDRVALPLMLPASVAERLSRPDPLTRTPMRDWDAVLAYCDTVLTGAPPGQLRILFLDSSNHIIADEALDA
ALDTGELDLVQRHILLRALDLHATAFVGIRIAPVWPPPAALVERDAVLMQAISYHAQNLSLTVQDHLILHHGQWLSLRQQ
RRL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=216, Percent_Identity=24.537037037037, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26473; Mature: 26342

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTGGDGGKAPRQSAPFKETGPTGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRD
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
TKPMAKALLNRFGSLGALLSAPADALRAAGLSDRVALPLMLPASVAERLSRPDPLTRTPM
CCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCC
RDWDAVLAYCDTVLTGAPPGQLRILFLDSSNHIIADEALDAALDTGELDLVQRHILLRAL
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHH
DLHATAFVGIRIAPVWPPPAALVERDAVLMQAISYHAQNLSLTVQDHLILHHGQWLSLRQ
HHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHH
QRRL
HHCC
>Mature Secondary Structure 
TRTGGDGGKAPRQSAPFKETGPTGHRARMRARVLASGAGSLADYEIIEMLLFSGVPRRD
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
TKPMAKALLNRFGSLGALLSAPADALRAAGLSDRVALPLMLPASVAERLSRPDPLTRTPM
CCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCC
RDWDAVLAYCDTVLTGAPPGQLRILFLDSSNHIIADEALDAALDTGELDLVQRHILLRAL
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHH
DLHATAFVGIRIAPVWPPPAALVERDAVLMQAISYHAQNLSLTVQDHLILHHGQWLSLRQ
HHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHH
QRRL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]