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The map label for this gene is radC [C]

Identifier: 162147769

GI number: 162147769

Start: 2017847

End: 2018512

Strand: Reverse

Name: radC [C]

Synonym: GDI_1985

Alternate gene names: 162147769

Gene position: 2018512-2017847 (Counterclockwise)

Preceding gene: 162147771

Following gene: 162147768

Centisome position: 51.18

GC content: 70.12

Gene sequence:

>666_bases
ATGAACCTGCCCCCCACGGACCGTGCGGGCGCCCCTGGCGGCTCCCCACACGACGCTGCGGACGATACCGCGCTGCTGGC
CTCGATTCTGGCCCTGGCCCTGCCGCCCGGTGCCGATCCGGCGGATGCCGCCCGTGCGTTGCTGGCGCGTTTCGGCACCA
TCGGCGCGGTCTTCGCCGCCGACCCGGCGGAACTGGCCTCGGCCGTCGCGGGACGGTTGCAAATCCGCGTGATCGTCCCG
CTACTGCGCGAAGCCGCGATCCGCCTGATGCGCGCCCGCATCAGGCAGGGCGACCTGCTGTCCTGCCACGATGCGCTGAT
GGCCTATCTGCAGGCGTCGCTGGCGCGGGACACGGTCGAACAGTTCCGCGTCCTGTTCCTGGACCGTGGTACGCGGCTGA
TCGCCGATGAGGTCCTGGCCCAGGGCACGATCGACCAGACCCCGGTCTACCCGCGCGAGGTCATGCGCCGCGCCATCCAG
CTGAAGGCCAGCGAACTGATCCTGGTCCACAACCACCCCGGCTGGAACCCGACCCCGTCGCGCGAGGATATCGCCATGAC
CCGCCGGCTGGCGCAGATCGCCACCGTGCTGGGCCTGACGGTCCGCGATCACGTGATCGTCGGAAACGGCGCTTCGATCA
GCTTCCGCCAAGCGGGCCTGCTTTAA

Upstream 100 bases:

>100_bases
ATAATCCTTTAGGCTCCATGAGTATTCTATATACGCACGCAATCGAGCCGTTGCGACCGTCACCCGAGGCATCCGGCCCT
GTACCAGGCGGGACCTGCCG

Downstream 100 bases:

>100_bases
AGGATGTGACATGACCGGAACGAACTTCGCTGCCAAACGCATTCTGCTGACCAACGACGATGGAATCGACGTGCCGGGCC
TGCAGGTCCTGGAACAGGTC

Product: DNA repair protein radC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNLPPTDRAGAPGGSPHDAADDTALLASILALALPPGADPADAARALLARFGTIGAVFAADPAELASAVAGRLQIRVIVP
LLREAAIRLMRARIRQGDLLSCHDALMAYLQASLARDTVEQFRVLFLDRGTRLIADEVLAQGTIDQTPVYPREVMRRAIQ
LKASELILVHNHPGWNPTPSREDIAMTRRLAQIATVLGLTVRDHVIVGNGASISFRQAGLL

Sequences:

>Translated_221_residues
MNLPPTDRAGAPGGSPHDAADDTALLASILALALPPGADPADAARALLARFGTIGAVFAADPAELASAVAGRLQIRVIVP
LLREAAIRLMRARIRQGDLLSCHDALMAYLQASLARDTVEQFRVLFLDRGTRLIADEVLAQGTIDQTPVYPREVMRRAIQ
LKASELILVHNHPGWNPTPSREDIAMTRRLAQIATVLGLTVRDHVIVGNGASISFRQAGLL
>Mature_221_residues
MNLPPTDRAGAPGGSPHDAADDTALLASILALALPPGADPADAARALLARFGTIGAVFAADPAELASAVAGRLQIRVIVP
LLREAAIRLMRARIRQGDLLSCHDALMAYLQASLARDTVEQFRVLFLDRGTRLIADEVLAQGTIDQTPVYPREVMRRAIQ
LKASELILVHNHPGWNPTPSREDIAMTRRLAQIATVLGLTVRDHVIVGNGASISFRQAGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=208, Percent_Identity=31.7307692307692, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI2367100, Length=121, Percent_Identity=44.6280991735537, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=46.078431372549, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788997, Length=113, Percent_Identity=41.5929203539823, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 23624; Mature: 23624

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPPTDRAGAPGGSPHDAADDTALLASILALALPPGADPADAARALLARFGTIGAVFAA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DPAELASAVAGRLQIRVIVPLLREAAIRLMRARIRQGDLLSCHDALMAYLQASLARDTVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFRVLFLDRGTRLIADEVLAQGTIDQTPVYPREVMRRAIQLKASELILVHNHPGWNPTPS
HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
REDIAMTRRLAQIATVLGLTVRDHVIVGNGASISFRQAGLL
HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEHHCCCCC
>Mature Secondary Structure
MNLPPTDRAGAPGGSPHDAADDTALLASILALALPPGADPADAARALLARFGTIGAVFAA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DPAELASAVAGRLQIRVIVPLLREAAIRLMRARIRQGDLLSCHDALMAYLQASLARDTVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFRVLFLDRGTRLIADEVLAQGTIDQTPVYPREVMRRAIQLKASELILVHNHPGWNPTPS
HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
REDIAMTRRLAQIATVLGLTVRDHVIVGNGASISFRQAGLL
HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA