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The map label for this gene is comF [H]

Identifier: 162147687

GI number: 162147687

Start: 1939171

End: 1940001

Strand: Direct

Name: comF [H]

Synonym: GDI_1903

Alternate gene names: 162147687

Gene position: 1939171-1940001 (Clockwise)

Preceding gene: 162147685

Following gene: 162147688

Centisome position: 49.17

GC content: 73.29

Gene sequence:

>831_bases
GTGATGGATGGGGCGATACGCACGACAACGATGACCGGACCGGGGGGCATGGCGCGCCGCCTGGGGTCGCTTCTGCTGGA
TGGTCTTCTGCCACCCGACTGCCCCCTGTGTCACCAGCCGGTCGAGCGGGCGGGCCTGCTGTGTCCGGACTGCTTCCGGC
ATATGCGCTTCATTTCCGAACCCTGCTGCGATGCGTGCGGCGAACCCTTTGCCGGCGCGGGGTTCGCCGGGTCGGTCCTG
GGTGGGGCGGGGCGCATCTGCGCATCCTGCGCGGACCGGCGGCCGCCGTGGCGGGCCGGGCGGGCGGCGCTGGTCTATGA
CGAATGGTCGCGTGCGCTGATCCTGCGCCTGAAATATGCCGACCGGACCGAGCTTGCGCCCCTGCTTGGCCGCCACATGG
CGCGGATCGGCCAGGGGATGCTGGGCCAGGCGGACCTGCTGGTGCCCGTGCCGCTGCACCGTCGCCGGCTGTTTCGCCGC
CGCTACAACCAGGCCGCCCTCCTGGCGCGGGCGGTGGGGCGGACCGTGGGGCTGCGGACCCTGCCCGATGCGCTGATCCG
TCCGCAGGCGACGCCGCCGCTGGCGCGGCTGGGCCCGGCCTCGCGTCGCGATATCCTGCATGGCGCGATCGCGGTCCGCC
CGTCGCGGCGGGCCGCGATCGCGAACCGGCGAATCGTCCTGGTAGACGATGTCATGACCACGGGGGCGACGACGGGCGAA
TGCGCGCGGGTCCTTCTTGCCGCCGGGGCGGCATCGGTGGACGTGCTGGTGGCGGCCCGCGCGCCCGATCCCGGCCGCGA
TCCGTCCCAGGATACGGGGCAGCACCCGTAA

Upstream 100 bases:

>100_bases
CGATCGCGGTGCCGACGCACCGCGCGCCGGTCGAAAATCAGGGGATCATTCATGGACGGCATGTGCTCTTCCGGATGGAG
GATGCCAATGGCACCTTTGC

Downstream 100 bases:

>100_bases
CGGTATGTTGCCCCGGCATAAATGCGCTATGCTTGATAACAGGCCGCTATTCGAGGATCAGGATGCCCAGGATCGAGATC
TATACCCAGCCGGGATGCCC

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MMDGAIRTTTMTGPGGMARRLGSLLLDGLLPPDCPLCHQPVERAGLLCPDCFRHMRFISEPCCDACGEPFAGAGFAGSVL
GGAGRICASCADRRPPWRAGRAALVYDEWSRALILRLKYADRTELAPLLGRHMARIGQGMLGQADLLVPVPLHRRRLFRR
RYNQAALLARAVGRTVGLRTLPDALIRPQATPPLARLGPASRRDILHGAIAVRPSRRAAIANRRIVLVDDVMTTGATTGE
CARVLLAAGAASVDVLVAARAPDPGRDPSQDTGQHP

Sequences:

>Translated_276_residues
MMDGAIRTTTMTGPGGMARRLGSLLLDGLLPPDCPLCHQPVERAGLLCPDCFRHMRFISEPCCDACGEPFAGAGFAGSVL
GGAGRICASCADRRPPWRAGRAALVYDEWSRALILRLKYADRTELAPLLGRHMARIGQGMLGQADLLVPVPLHRRRLFRR
RYNQAALLARAVGRTVGLRTLPDALIRPQATPPLARLGPASRRDILHGAIAVRPSRRAAIANRRIVLVDDVMTTGATTGE
CARVLLAAGAASVDVLVAARAPDPGRDPSQDTGQHP
>Mature_276_residues
MMDGAIRTTTMTGPGGMARRLGSLLLDGLLPPDCPLCHQPVERAGLLCPDCFRHMRFISEPCCDACGEPFAGAGFAGSVL
GGAGRICASCADRRPPWRAGRAALVYDEWSRALILRLKYADRTELAPLLGRHMARIGQGMLGQADLLVPVPLHRRRLFRR
RYNQAALLARAVGRTVGLRTLPDALIRPQATPPLARLGPASRRDILHGAIAVRPSRRAAIANRRIVLVDDVMTTGATTGE
CARVLLAAGAASVDVLVAARAPDPGRDPSQDTGQHP

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=239, Percent_Identity=30.9623430962343, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 29522; Mature: 29522

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDGAIRTTTMTGPGGMARRLGSLLLDGLLPPDCPLCHQPVERAGLLCPDCFRHMRFISE
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCHHHHHHHHHHHH
PCCDACGEPFAGAGFAGSVLGGAGRICASCADRRPPWRAGRAALVYDEWSRALILRLKYA
HHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEHHHHCCEEEEEEECC
DRTELAPLLGRHMARIGQGMLGQADLLVPVPLHRRRLFRRRYNQAALLARAVGRTVGLRT
CCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LPDALIRPQATPPLARLGPASRRDILHGAIAVRPSRRAAIANRRIVLVDDVMTTGATTGE
HHHHHHCCCCCCCHHHCCCCHHHHHHHHHHEECCCHHHHHHCCCEEEEECHHHCCCCHHH
CARVLLAAGAASVDVLVAARAPDPGRDPSQDTGQHP
HHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMDGAIRTTTMTGPGGMARRLGSLLLDGLLPPDCPLCHQPVERAGLLCPDCFRHMRFISE
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCHHHHHHHHHHHH
PCCDACGEPFAGAGFAGSVLGGAGRICASCADRRPPWRAGRAALVYDEWSRALILRLKYA
HHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCEEEEHHHHCCEEEEEEECC
DRTELAPLLGRHMARIGQGMLGQADLLVPVPLHRRRLFRRRYNQAALLARAVGRTVGLRT
CCHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LPDALIRPQATPPLARLGPASRRDILHGAIAVRPSRRAAIANRRIVLVDDVMTTGATTGE
HHHHHHCCCCCCCHHHCCCCHHHHHHHHHHEECCCHHHHHHCCCEEEEECHHHCCCCHHH
CARVLLAAGAASVDVLVAARAPDPGRDPSQDTGQHP
HHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]