Click here to switch to the map view.

The map label for this gene is yjbQ [C]

Identifier: 162147638

GI number: 162147638

Start: 1892442

End: 1892861

Strand: Reverse

Name: yjbQ [C]

Synonym: GDI_1854

Alternate gene names: 162147638

Gene position: 1892861-1892442 (Counterclockwise)

Preceding gene: 162147639

Following gene: 162147635

Centisome position: 47.99

GC content: 65.24

Gene sequence:

>420_bases
ATGCGCCAGGCCCTGCATCGCCTCAGCATCGCCACCCACGGCAAGGGCCTGGTGATGTTCACGCGCGACGTCCTGCACTG
GGTCGCGGATACCGGGATCGAAACCGGCCTGCTGACGCTATGGTGCCGGCATACCTCGGCCTCGCTGACCGTGCAGGAAA
ACGCCGACCCGACGGTGCTGGAGGACATCAAGCGCTATTTCGAGGCGCTGGTCCCCGAGGCGCCCGGCCGCTACATTCAT
GACGACGAGGGACCGGACGACATGCCGGCCCATTTGCGCAGCATGCTGACCCAGACCCAGCTTTCGATCCCGGTTGCCGA
CGGGCGGCCGGTCCTGGGCACATGGCAGGGGCTTTACCTGTTCGAACACCGCCGCCAGCCCCATCGACGCGAAATCATCC
TGCACCTTATAGGCGAATAG

Upstream 100 bases:

>100_bases
AGGGGCCGCACGCGCGAACGCCATTGCCGAGCCGATCGTCAGCGAGGTCGAACGCCTCGTCGGCTTCCTGAAATAGAGAC
ACATTATCGGGAGCATCCCC

Downstream 100 bases:

>100_bases
GCCCCTATCGCCGCAGGATCGCCGCGTGATGGGTCAGGTGATCCTGGATGAAGGACTGGATGAACCAGTAGGAATGATCG
TATCCGGCGTGGCGGCGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRQALHRLSIATHGKGLVMFTRDVLHWVADTGIETGLLTLWCRHTSASLTVQENADPTVLEDIKRYFEALVPEAPGRYIH
DDEGPDDMPAHLRSMLTQTQLSIPVADGRPVLGTWQGLYLFEHRRQPHRREIILHLIGE

Sequences:

>Translated_139_residues
MRQALHRLSIATHGKGLVMFTRDVLHWVADTGIETGLLTLWCRHTSASLTVQENADPTVLEDIKRYFEALVPEAPGRYIH
DDEGPDDMPAHLRSMLTQTQLSIPVADGRPVLGTWQGLYLFEHRRQPHRREIILHLIGE
>Mature_139_residues
MRQALHRLSIATHGKGLVMFTRDVLHWVADTGIETGLLTLWCRHTSASLTVQENADPTVLEDIKRYFEALVPEAPGRYIH
DDEGPDDMPAHLRSMLTQTQLSIPVADGRPVLGTWQGLYLFEHRRQPHRREIILHLIGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=133, Percent_Identity=45.8646616541353, Blast_Score=110, Evalue=2e-26,
Organism=Drosophila melanogaster, GI221476594, Length=133, Percent_Identity=36.8421052631579, Blast_Score=96, Evalue=5e-21,
Organism=Drosophila melanogaster, GI221476589, Length=133, Percent_Identity=36.8421052631579, Blast_Score=96, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15851; Mature: 15851

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQALHRLSIATHGKGLVMFTRDVLHWVADTGIETGLLTLWCRHTSASLTVQENADPTVL
CCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHHEEEECCCCEEEEECCCCCHHH
EDIKRYFEALVPEAPGRYIHDDEGPDDMPAHLRSMLTQTQLSIPVADGRPVLGTWQGLYL
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCEECCHHHHH
FEHRRQPHRREIILHLIGE
HHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRQALHRLSIATHGKGLVMFTRDVLHWVADTGIETGLLTLWCRHTSASLTVQENADPTVL
CCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHHEEEECCCCEEEEECCCCCHHH
EDIKRYFEALVPEAPGRYIHDDEGPDDMPAHLRSMLTQTQLSIPVADGRPVLGTWQGLYL
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCEECCHHHHH
FEHRRQPHRREIILHLIGE
HHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]