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The map label for this gene is ytfM [H]

Identifier: 162147628

GI number: 162147628

Start: 1878601

End: 1880619

Strand: Direct

Name: ytfM [H]

Synonym: GDI_1844

Alternate gene names: 162147628

Gene position: 1878601-1880619 (Clockwise)

Preceding gene: 162147620

Following gene: 162147629

Centisome position: 47.63

GC content: 69.89

Gene sequence:

>2019_bases
TTGACAGGGTCACGGCGGCCCCGTGCGACATCGCGGGGAAGGGCGAGCAGGGCGGATCGTGCCGGAGAAGATCGTGCCGG
GGCCGGACGCACCGCGTCCCGTCGGGCCGTCCTGGTCGTGGGGCTGGTCGTCTTCGTGGGCTGGATGCCGCCGCCCGTTC
GCGGCGCGGACCCGCAATCCTACGTCACCGTGATCCGCCCGACCGGCCAGGGCGACCTGGACGCGGCGATCAGCGCGTCC
TCCAGCCTGCTGTCCCTGCAGAAGACCAAGGCCGTCAGCCCGTTCGCGCTCGCCGGCCGCATCCGCAACGATTACGACCG
CCTGCGCACCGCCCTGGAAAGCTACGGCTACTACGCCGCGACGATCCGCATCGCCGTCGGACTGCGCGCCGGGGGGCACG
CCGCGCCGTCGGCGCCGCCGGCGACGATGGATGGCCAGGACCCGCGCCTGCCGGAATGGCTGCTGGCGGTTCCCAAGGGG
CAGGCCGTGCAGGTCACCATCACGCCGGTCCGGGGCGACATCTTCCATCTGGGGCAGGTGACGCTGAAGCCGTCGCCGGA
GGACGGCACGGCCCCGATCGTCCTCAACGCCCCGGAACGCACCGCCCTGGGCGTGGCCTCGGGCCATCCGGCCATCGCGT
CCGACGTGCTGGCGGGCGGGGTGAACCTGCAGGCGGAACTGAAGGAGGAAGGCCACGCCCTGGCGCAGGTCGGCACGCCC
AAGGCCTGGCTGCGGCCCCAGACCCATACGCTGGACGTCGAATACACCGTGCGGCGCGGGCCGATCGTGACGATCGGCGC
CATCGCGCTGTCCGGGCTGAAGCGGACCCATCCCGCCTATATCGCGCGGCGGATCACCCTGCACCCCGACCAGCTTTACC
AGCCGTCACACATCGAGGCGGCGCGGCAGGACCTGGCGTCGCTCGGCGTGTTTTCCGACGTGCAGGCCAGCGACGCGCCG
CCGCTGACGGCTGGCCGGCAAATGCCGCTGAACTTCGCCTTCACCGAGGGCAAGCAGCGGATGGCGGAGGTGGAGGGCGG
ATATTCCACCGACCTGGGCGGCCGGGGCGGCGTAAGCTGGACGCACAACAACATCTTCGGCAATGCCGAGCGCCTGCGCC
TGACCACCCTGGTGACGGGACTGGGCGGTTCGGCGCAGCAGGGGCTGGGCTATGACGTATATGCCGACCTGCTGAAGCCG
GATTTCGGTGACCGCGACCAGAACCTGAGCGTGCGGGTCGAGGGAATCCGCCAGTTGCTCTATTCCTACCGGCAGACGGC
GCTGCTGGTCCGCGCGGGCATCGTCCGCCATCTGGGGCGGCGATGGACGGTGTCTTTCGGCGGCGAGGCCGAACAGGAAC
ATATCGAACAGATGGGGATGTCCAACGACTACACCATCGTGTCCCTGCCCCTGTCCGCGACCTATGACAGCACGGGGCTG
ACCAACCCGATCGACCCCGCGACCCACGGGGTGCGCATCGCCGCCAGCGCGACGCCCTCGGCCTCCCTGATCAGCGGCAC
GTCGTTCTTCACCATCCTGCAGGCGACGGCATCCACCTATTTCGACCTGTCGCATGTGGGCCTTTCGCGGCCCGGGCGCA
GCGTCTTCGCGTTTCGCGGCGTCGTCGGCAGCGTGCAGGGGGCTTCGACGTTCGAGATTCCGCCTGATCAACGCCTGTAT
GCCGGCGGCAGCGCGACCGTGCGCGGCTTCCGCTACCAGGGCGTGGGGCCGCAATTTCCCAACAGCAAATACGCGATCGG
CGGCACGTCGATGGATGCGGGCACCGTGGAATTCCGCCAGCGCCTGTTCCGCAGCTTCGGCGCGGCGCTGTTCGCCGATG
CCGGCCAGGTCGACACCGGCAGCAGCCCCCTGCATGGCACGCTGCGCGTCGGCGCAGGGGCAGGGGTGCGGTACTATACG
CCGATCGGCCCGGTGCGGGTGGACGTCGCGTTCCCGCTGAACCGGCCGGCGCAAGGCGATACGTGGGAACTCTATATCGG
CCTGGGGGAAACCTTCTGA

Upstream 100 bases:

>100_bases
CATACGGATCATTCGGACGCGCGCGCGTCCGAAGGCGGGGTGAACGGATGGCCGGCCGGCCCGTTAGCAGGAACGAAGAC
AAAGGCGGGACAGGGACACA

Downstream 100 bases:

>100_bases
TGGCGCCCGACAGTCCCGCTCCGACCCCGCCATCCGCCCGCGTGCCGGGGCGCCGCTGGCGCCGGATCGCCGCATGGACC
GCCGGCATGGTGGTGGGCGT

Product: surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 671

Protein sequence:

>672_residues
MTGSRRPRATSRGRASRADRAGEDRAGAGRTASRRAVLVVGLVVFVGWMPPPVRGADPQSYVTVIRPTGQGDLDAAISAS
SSLLSLQKTKAVSPFALAGRIRNDYDRLRTALESYGYYAATIRIAVGLRAGGHAAPSAPPATMDGQDPRLPEWLLAVPKG
QAVQVTITPVRGDIFHLGQVTLKPSPEDGTAPIVLNAPERTALGVASGHPAIASDVLAGGVNLQAELKEEGHALAQVGTP
KAWLRPQTHTLDVEYTVRRGPIVTIGAIALSGLKRTHPAYIARRITLHPDQLYQPSHIEAARQDLASLGVFSDVQASDAP
PLTAGRQMPLNFAFTEGKQRMAEVEGGYSTDLGGRGGVSWTHNNIFGNAERLRLTTLVTGLGGSAQQGLGYDVYADLLKP
DFGDRDQNLSVRVEGIRQLLYSYRQTALLVRAGIVRHLGRRWTVSFGGEAEQEHIEQMGMSNDYTIVSLPLSATYDSTGL
TNPIDPATHGVRIAASATPSASLISGTSFFTILQATASTYFDLSHVGLSRPGRSVFAFRGVVGSVQGASTFEIPPDQRLY
AGGSATVRGFRYQGVGPQFPNSKYAIGGTSMDAGTVEFRQRLFRSFGAALFADAGQVDTGSSPLHGTLRVGAGAGVRYYT
PIGPVRVDVAFPLNRPAQGDTWELYIGLGETF

Sequences:

>Translated_672_residues
MTGSRRPRATSRGRASRADRAGEDRAGAGRTASRRAVLVVGLVVFVGWMPPPVRGADPQSYVTVIRPTGQGDLDAAISAS
SSLLSLQKTKAVSPFALAGRIRNDYDRLRTALESYGYYAATIRIAVGLRAGGHAAPSAPPATMDGQDPRLPEWLLAVPKG
QAVQVTITPVRGDIFHLGQVTLKPSPEDGTAPIVLNAPERTALGVASGHPAIASDVLAGGVNLQAELKEEGHALAQVGTP
KAWLRPQTHTLDVEYTVRRGPIVTIGAIALSGLKRTHPAYIARRITLHPDQLYQPSHIEAARQDLASLGVFSDVQASDAP
PLTAGRQMPLNFAFTEGKQRMAEVEGGYSTDLGGRGGVSWTHNNIFGNAERLRLTTLVTGLGGSAQQGLGYDVYADLLKP
DFGDRDQNLSVRVEGIRQLLYSYRQTALLVRAGIVRHLGRRWTVSFGGEAEQEHIEQMGMSNDYTIVSLPLSATYDSTGL
TNPIDPATHGVRIAASATPSASLISGTSFFTILQATASTYFDLSHVGLSRPGRSVFAFRGVVGSVQGASTFEIPPDQRLY
AGGSATVRGFRYQGVGPQFPNSKYAIGGTSMDAGTVEFRQRLFRSFGAALFADAGQVDTGSSPLHGTLRVGAGAGVRYYT
PIGPVRVDVAFPLNRPAQGDTWELYIGLGETF
>Mature_671_residues
TGSRRPRATSRGRASRADRAGEDRAGAGRTASRRAVLVVGLVVFVGWMPPPVRGADPQSYVTVIRPTGQGDLDAAISASS
SLLSLQKTKAVSPFALAGRIRNDYDRLRTALESYGYYAATIRIAVGLRAGGHAAPSAPPATMDGQDPRLPEWLLAVPKGQ
AVQVTITPVRGDIFHLGQVTLKPSPEDGTAPIVLNAPERTALGVASGHPAIASDVLAGGVNLQAELKEEGHALAQVGTPK
AWLRPQTHTLDVEYTVRRGPIVTIGAIALSGLKRTHPAYIARRITLHPDQLYQPSHIEAARQDLASLGVFSDVQASDAPP
LTAGRQMPLNFAFTEGKQRMAEVEGGYSTDLGGRGGVSWTHNNIFGNAERLRLTTLVTGLGGSAQQGLGYDVYADLLKPD
FGDRDQNLSVRVEGIRQLLYSYRQTALLVRAGIVRHLGRRWTVSFGGEAEQEHIEQMGMSNDYTIVSLPLSATYDSTGLT
NPIDPATHGVRIAASATPSASLISGTSFFTILQATASTYFDLSHVGLSRPGRSVFAFRGVVGSVQGASTFEIPPDQRLYA
GGSATVRGFRYQGVGPQFPNSKYAIGGTSMDAGTVEFRQRLFRSFGAALFADAGQVDTGSSPLHGTLRVGAGAGVRYYTP
IGPVRVDVAFPLNRPAQGDTWELYIGLGETF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=428, Percent_Identity=23.3644859813084, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 71465; Mature: 71333

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSRRPRATSRGRASRADRAGEDRAGAGRTASRRAVLVVGLVVFVGWMPPPVRGADPQS
CCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
YVTVIRPTGQGDLDAAISASSSLLSLQKTKAVSPFALAGRIRNDYDRLRTALESYGYYAA
EEEEEEECCCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
TIRIAVGLRAGGHAAPSAPPATMDGQDPRLPEWLLAVPKGQAVQVTITPVRGDIFHLGQV
EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCEEEEEEEECCCCEEEECEE
TLKPSPEDGTAPIVLNAPERTALGVASGHPAIASDVLAGGVNLQAELKEEGHALAQVGTP
EECCCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCEEEHHHHCCCEEEECCCC
KAWLRPQTHTLDVEYTVRRGPIVTIGAIALSGLKRTHPAYIARRITLHPDQLYQPSHIEA
HHHCCCCCEEEEEEEEECCCCEEEEHHHHHHHHCCCCHHHHEEEEEECHHHCCCCCHHHH
ARQDLASLGVFSDVQASDAPPLTAGRQMPLNFAFTEGKQRMAEVEGGYSTDLGGRGGVSW
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCE
THNNIFGNAERLRLTTLVTGLGGSAQQGLGYDVYADLLKPDFGDRDQNLSVRVEGIRQLL
ECCCCCCCHHHEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHHHHH
YSYRQTALLVRAGIVRHLGRRWTVSFGGEAEQEHIEQMGMSNDYTIVSLPLSATYDSTGL
HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
TNPIDPATHGVRIAASATPSASLISGTSFFTILQATASTYFDLSHVGLSRPGRSVFAFRG
CCCCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHEEHHHCCCCCCCCCEEEEHH
VVGSVQGASTFEIPPDQRLYAGGSATVRGFRYQGVGPQFPNSKYAIGGTSMDAGTVEFRQ
HHCCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHHH
RLFRSFGAALFADAGQVDTGSSPLHGTLRVGAGAGVRYYTPIGPVRVDVAFPLNRPAQGD
HHHHHHCHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCC
TWELYIGLGETF
EEEEEEECCCCC
>Mature Secondary Structure 
TGSRRPRATSRGRASRADRAGEDRAGAGRTASRRAVLVVGLVVFVGWMPPPVRGADPQS
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
YVTVIRPTGQGDLDAAISASSSLLSLQKTKAVSPFALAGRIRNDYDRLRTALESYGYYAA
EEEEEEECCCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
TIRIAVGLRAGGHAAPSAPPATMDGQDPRLPEWLLAVPKGQAVQVTITPVRGDIFHLGQV
EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCEEEEEEEECCCCEEEECEE
TLKPSPEDGTAPIVLNAPERTALGVASGHPAIASDVLAGGVNLQAELKEEGHALAQVGTP
EECCCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHCCCCEEEHHHHCCCEEEECCCC
KAWLRPQTHTLDVEYTVRRGPIVTIGAIALSGLKRTHPAYIARRITLHPDQLYQPSHIEA
HHHCCCCCEEEEEEEEECCCCEEEEHHHHHHHHCCCCHHHHEEEEEECHHHCCCCCHHHH
ARQDLASLGVFSDVQASDAPPLTAGRQMPLNFAFTEGKQRMAEVEGGYSTDLGGRGGVSW
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCE
THNNIFGNAERLRLTTLVTGLGGSAQQGLGYDVYADLLKPDFGDRDQNLSVRVEGIRQLL
ECCCCCCCHHHEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHHHHH
YSYRQTALLVRAGIVRHLGRRWTVSFGGEAEQEHIEQMGMSNDYTIVSLPLSATYDSTGL
HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCC
TNPIDPATHGVRIAASATPSASLISGTSFFTILQATASTYFDLSHVGLSRPGRSVFAFRG
CCCCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHEEHHHCCCCCCCCCEEEEHH
VVGSVQGASTFEIPPDQRLYAGGSATVRGFRYQGVGPQFPNSKYAIGGTSMDAGTVEFRQ
HHCCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHHH
RLFRSFGAALFADAGQVDTGSSPLHGTLRVGAGAGVRYYTPIGPVRVDVAFPLNRPAQGD
HHHHHHCHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEECCCCCCCCC
TWELYIGLGETF
EEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]