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The map label for this gene is yocS [H]

Identifier: 162147623

GI number: 162147623

Start: 1873078

End: 1874007

Strand: Reverse

Name: yocS [H]

Synonym: GDI_1839

Alternate gene names: 162147623

Gene position: 1874007-1873078 (Counterclockwise)

Preceding gene: 162147624

Following gene: 162147622

Centisome position: 47.51

GC content: 70.54

Gene sequence:

>930_bases
TTGTCGGTCCTGACCCGCCTCTTCCCCCTGTGGGCGATCCTGGTCTCGGCCTCGGCCATTCGCTGGCCGGGGCCGTTCCT
GGCGCTGTCGCCCGCCATCACGCCGTTGCTGGCGTTCGTGATGTTCACCATGGGCGTCACGCTGACCGTGGCGGATTTCC
GCCGTATCGCCCGGCGACCGGCCCCGGTCCTGGCCGGGATCGTGCTGCATTACACCATCATGCCGCTGGCGGCGTGGCTG
GTCGCGCGCATGCTGGGCCTGCCGCCGGCGCTGCGGGTGGGCATGATCCTGGTCGGCAGCGTCTCCAGCGGCACGGCGTC
CAACGTGATGATCTACCTGGCGCGGGGGGACGTGGCGCTGTCGGTCAGCATCAGCACGCTGTCGACCCTGGTGGGCATCG
TGGCCACCCCGCTGCTGACGCGGCTCTACGTCTCGGCCGACGTCGCGGTCGACACATGGGCGCTGTTGCGCAGCATCGTC
GAACTGGTGGCCCTGCCGGTCGTGGGGGGCCTGGCGGTCAACATGCTGGCCCATCGCGCCGTGCGGCGCATCGAACCCGC
GCTGCCGCTGGTGGCGATGATCGCGATCATGGCCATCATCGGCTCGATCGTCGCGTCGGTCCGTCCGTCCCTGGCCTTCG
CCGGGCCGATCGTCCTGCTGGCCGTGATGCTGCATAACGGGATGGGCCTGCTGGGCGGCTATTGGGGCGGCCGCCTGCTG
CGGCTGGACGAAAGCGCCTGCCGCACCCTGGCCATCGAGGTCGGGATGCAGAATTCCGGCCTGGCGGCCACGCTGGGGCG
GCTTTATTTCGGCCCGCTGGCGGCCCTGCCGGGGGCGATCTTCTCGATCTGGCACAATATCTCGGGCTCGGCCCTGTCGG
CATGGTGGGCCGGGCGGCCGGTGCGCGACACGGCGCCCCGATCCTCTTGA

Upstream 100 bases:

>100_bases
CTGGTCTTCCGGGTGCTGGACGCGGATTCGCTGCATATCCGCAAGGTTCGCGTCCGCCCGCCGCCACCGCCGCCCGCGCC
AGCCGCCTGATCCCCTATCC

Downstream 100 bases:

>100_bases
CGCCTGCGCGCTTTGCGGGCTTTTTCGCCATTCCCGCGACCCGTTCGATCCAGCATGCCGGAGACCGTTCAGCCATGCCC
GTTACCCGCCGCACCCTGAT

Product: transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSVLTRLFPLWAILVSASAIRWPGPFLALSPAITPLLAFVMFTMGVTLTVADFRRIARRPAPVLAGIVLHYTIMPLAAWL
VARMLGLPPALRVGMILVGSVSSGTASNVMIYLARGDVALSVSISTLSTLVGIVATPLLTRLYVSADVAVDTWALLRSIV
ELVALPVVGGLAVNMLAHRAVRRIEPALPLVAMIAIMAIIGSIVASVRPSLAFAGPIVLLAVMLHNGMGLLGGYWGGRLL
RLDESACRTLAIEVGMQNSGLAATLGRLYFGPLAALPGAIFSIWHNISGSALSAWWAGRPVRDTAPRSS

Sequences:

>Translated_309_residues
MSVLTRLFPLWAILVSASAIRWPGPFLALSPAITPLLAFVMFTMGVTLTVADFRRIARRPAPVLAGIVLHYTIMPLAAWL
VARMLGLPPALRVGMILVGSVSSGTASNVMIYLARGDVALSVSISTLSTLVGIVATPLLTRLYVSADVAVDTWALLRSIV
ELVALPVVGGLAVNMLAHRAVRRIEPALPLVAMIAIMAIIGSIVASVRPSLAFAGPIVLLAVMLHNGMGLLGGYWGGRLL
RLDESACRTLAIEVGMQNSGLAATLGRLYFGPLAALPGAIFSIWHNISGSALSAWWAGRPVRDTAPRSS
>Mature_308_residues
SVLTRLFPLWAILVSASAIRWPGPFLALSPAITPLLAFVMFTMGVTLTVADFRRIARRPAPVLAGIVLHYTIMPLAAWLV
ARMLGLPPALRVGMILVGSVSSGTASNVMIYLARGDVALSVSISTLSTLVGIVATPLLTRLYVSADVAVDTWALLRSIVE
LVALPVVGGLAVNMLAHRAVRRIEPALPLVAMIAIMAIIGSIVASVRPSLAFAGPIVLLAVMLHNGMGLLGGYWGGRLLR
LDESACRTLAIEVGMQNSGLAATLGRLYFGPLAALPGAIFSIWHNISGSALSAWWAGRPVRDTAPRSS

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=258, Percent_Identity=31.0077519379845, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4506971, Length=296, Percent_Identity=25, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI37537552, Length=248, Percent_Identity=24.5967741935484, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI215422370, Length=226, Percent_Identity=28.3185840707965, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9790143, Length=226, Percent_Identity=28.3185840707965, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI215422368, Length=232, Percent_Identity=28.448275862069, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 32541; Mature: 32409

Theoretical pI: Translated: 11.98; Mature: 11.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLTRLFPLWAILVSASAIRWPGPFLALSPAITPLLAFVMFTMGVTLTVADFRRIARRP
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APVLAGIVLHYTIMPLAAWLVARMLGLPPALRVGMILVGSVSSGTASNVMIYLARGDVAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHEECCCCCCCCCEEEEEEECCEEE
SVSISTLSTLVGIVATPLLTRLYVSADVAVDTWALLRSIVELVALPVVGGLAVNMLAHRA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRIEPALPLVAMIAIMAIIGSIVASVRPSLAFAGPIVLLAVMLHNGMGLLGGYWGGRLL
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEE
RLDESACRTLAIEVGMQNSGLAATLGRLYFGPLAALPGAIFSIWHNISGSALSAWWAGRP
EECHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
VRDTAPRSS
CCCCCCCCC
>Mature Secondary Structure 
SVLTRLFPLWAILVSASAIRWPGPFLALSPAITPLLAFVMFTMGVTLTVADFRRIARRP
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APVLAGIVLHYTIMPLAAWLVARMLGLPPALRVGMILVGSVSSGTASNVMIYLARGDVAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHEECCCCCCCCCEEEEEEECCEEE
SVSISTLSTLVGIVATPLLTRLYVSADVAVDTWALLRSIVELVALPVVGGLAVNMLAHRA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRIEPALPLVAMIAIMAIIGSIVASVRPSLAFAGPIVLLAVMLHNGMGLLGGYWGGRLL
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEE
RLDESACRTLAIEVGMQNSGLAATLGRLYFGPLAALPGAIFSIWHNISGSALSAWWAGRP
EECHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
VRDTAPRSS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]