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The map label for this gene is ycfH [C]

Identifier: 162147585

GI number: 162147585

Start: 1832820

End: 1833611

Strand: Direct

Name: ycfH [C]

Synonym: GDI_1801

Alternate gene names: 162147585

Gene position: 1832820-1833611 (Clockwise)

Preceding gene: 162147584

Following gene: 162147586

Centisome position: 46.47

GC content: 68.31

Gene sequence:

>792_bases
ATGACGGGACTGATCGATTCGCACTGCCATCTGGACCATTTCACGGATGACGAGATCCCGGACCTGCTGGACAGGGCGCG
CCAGGCCGGGGTCGAAGGGATGGTGACGATCGGCACCCGCCTGTCGCGCGCGGCGCAGCAGAAGGACCTGACCCGCTTCA
GCCGCCCGGACCTGCGGGTGTGGTGCACGGTGGGCACGCACCCGGACCATGTGGACGAATGCACGGTCGCGGACGCGGCC
GGTATCGTGGCCCTGGCCGACGATCCGCGCGTGGTGGGAATCGGTGAGACGGGCCTGGATTACTTTCACGGGGCCGAATC
CGTGCGGCCGTTGCAGCAGGCGCGCTTTCGCGCCCATATCGCGGCCGCGCGGCAGATGGACCTGCCGCTGGTCATCCATG
CCCGCGATGCCGATGAGGATGTCGCCGAGATCCTGCGGGACGAAGTGGAGTCCCACGGCCCGTTCCGCTTCCTGCTGCAC
TGCTTCGCCTCGGGTCCCGACCTGGCGCGGGTGGGGCTGGAACTGGGGGGGTATGTCAGCTTCTCCGGTATCCTGACCTT
TCCGAAATCGGATGCGCTGCGTGCCGTGGCACGGGACATTCCCCAGGACAGGCTGCTGGTGGAAACCGATTCGCCCTATC
TGGCCCCGGTGCCGCAGCGGGGGCGCAAGAACGAGCCGGGTTTCGTCGCCCACACGGCGCGCCGGCTGGCGGAAGTACGG
GACATGACGCCCGAAAGCCTGGCCGAGGTCACGACCGCGAACTTCCACCGGCTGTTCAGCCGGGCGGCCTGA

Upstream 100 bases:

>100_bases
ACGAGCGCGATTTCGCGTCCCTGGCCACGCCGCTGCCGGGCGGACGCGCCCTGCCGCCGCCGCAGGGGATCTTTCCCCGT
TACGTGGAGGCCGAGGCGCA

Downstream 100 bases:

>100_bases
CCGATGGAACTGATCGTCCTGGGATGCGGCGGGTCGGCGGGGGTGCCGATGATCGGCGGCCCCGACGGCGCTGGCGACTG
GGGCGTCTGCGATCCGGCGG

Product: deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTGLIDSHCHLDHFTDDEIPDLLDRARQAGVEGMVTIGTRLSRAAQQKDLTRFSRPDLRVWCTVGTHPDHVDECTVADAA
GIVALADDPRVVGIGETGLDYFHGAESVRPLQQARFRAHIAAARQMDLPLVIHARDADEDVAEILRDEVESHGPFRFLLH
CFASGPDLARVGLELGGYVSFSGILTFPKSDALRAVARDIPQDRLLVETDSPYLAPVPQRGRKNEPGFVAHTARRLAEVR
DMTPESLAEVTTANFHRLFSRAA

Sequences:

>Translated_263_residues
MTGLIDSHCHLDHFTDDEIPDLLDRARQAGVEGMVTIGTRLSRAAQQKDLTRFSRPDLRVWCTVGTHPDHVDECTVADAA
GIVALADDPRVVGIGETGLDYFHGAESVRPLQQARFRAHIAAARQMDLPLVIHARDADEDVAEILRDEVESHGPFRFLLH
CFASGPDLARVGLELGGYVSFSGILTFPKSDALRAVARDIPQDRLLVETDSPYLAPVPQRGRKNEPGFVAHTARRLAEVR
DMTPESLAEVTTANFHRLFSRAA
>Mature_262_residues
TGLIDSHCHLDHFTDDEIPDLLDRARQAGVEGMVTIGTRLSRAAQQKDLTRFSRPDLRVWCTVGTHPDHVDECTVADAAG
IVALADDPRVVGIGETGLDYFHGAESVRPLQQARFRAHIAAARQMDLPLVIHARDADEDVAEILRDEVESHGPFRFLLHC
FASGPDLARVGLELGGYVSFSGILTFPKSDALRAVARDIPQDRLLVETDSPYLAPVPQRGRKNEPGFVAHTARRLAEVRD
MTPESLAEVTTANFHRLFSRAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=281, Percent_Identity=28.1138790035587, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=28.7822878228782, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI226061853, Length=279, Percent_Identity=29.3906810035842, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=28.0442804428044, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI226061614, Length=265, Percent_Identity=27.1698113207547, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI14042943, Length=272, Percent_Identity=23.8970588235294, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226061595, Length=239, Percent_Identity=28.8702928870293, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=40.9961685823755, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI48994985, Length=248, Percent_Identity=32.258064516129, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=28.6259541984733, Blast_Score=89, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=28.169014084507, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17543026, Length=301, Percent_Identity=28.2392026578073, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=27.6119402985075, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17565396, Length=303, Percent_Identity=26.4026402640264, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24586117, Length=217, Percent_Identity=31.3364055299539, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221330018, Length=217, Percent_Identity=31.3364055299539, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24648690, Length=271, Percent_Identity=29.520295202952, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28960; Mature: 28829

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLIDSHCHLDHFTDDEIPDLLDRARQAGVEGMVTIGTRLSRAAQQKDLTRFSRPDLRV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEE
WCTVGTHPDHVDECTVADAAGIVALADDPRVVGIGETGLDYFHGAESVRPLQQARFRAHI
EEEECCCCCCCCCCCHHCCCCEEEECCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHH
AAARQMDLPLVIHARDADEDVAEILRDEVESHGPFRFLLHCFASGPDLARVGLELGGYVS
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCEEE
FSGILTFPKSDALRAVARDIPQDRLLVETDSPYLAPVPQRGRKNEPGFVAHTARRLAEVR
ECEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
DMTPESLAEVTTANFHRLFSRAA
CCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGLIDSHCHLDHFTDDEIPDLLDRARQAGVEGMVTIGTRLSRAAQQKDLTRFSRPDLRV
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEE
WCTVGTHPDHVDECTVADAAGIVALADDPRVVGIGETGLDYFHGAESVRPLQQARFRAHI
EEEECCCCCCCCCCCHHCCCCEEEECCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHH
AAARQMDLPLVIHARDADEDVAEILRDEVESHGPFRFLLHCFASGPDLARVGLELGGYVS
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCEEE
FSGILTFPKSDALRAVARDIPQDRLLVETDSPYLAPVPQRGRKNEPGFVAHTARRLAEVR
ECEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
DMTPESLAEVTTANFHRLFSRAA
CCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]