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The map label for this gene is rpoD [H]

Identifier: 162147526

GI number: 162147526

Start: 1764431

End: 1764952

Strand: Direct

Name: rpoD [H]

Synonym: GDI_1742

Alternate gene names: 162147526

Gene position: 1764431-1764952 (Clockwise)

Preceding gene: 162147521

Following gene: 162147527

Centisome position: 44.74

GC content: 68.01

Gene sequence:

>522_bases
ATGTGTCTTTTACCTGATTTGCGGGGGTTTGCGCGCTTCCTGACGCGGGATACGGCGGCCTCTGACGATCTTGTGCAGGA
GACGGTGGTCCGTGCGCTGGGGGCGCTGGAGCAGTTCCGGGCGGACACCAACCTGAAGGCGTGGCTGTTCACCATCCAGC
GCAACATCTTTTACGAGCAGAGGCGCCGCAACCAGCGTGAACGGCTGGTCATGAGCGATTATGCCGCCGAGCCGCGACAC
GGCACCCAGGGGCGGCCGGCCAGTTCGGGCGACGACGTGCGCGATCTGGAAAGCGTGTTCTGGCTGCTGACCCCCCTGCT
GCGCGAGGCGCTGATCCTGGTGGGCGCGCAGGAGATGACGCACGAGGAAGCGGCCAGGATCTGCGGCGTGCCGGTGGGCA
CGATGAAGGCACGCGTGTCGCGGGCCCGGGCCCGGCTGGCCATCCTGGTCGCCCGGCCCCACGAAGACTGCGGTCTGGAC
GCCGACCTGGAATGCGATCCTGCGGCCGACGAGGCCCCGTGA

Upstream 100 bases:

>100_bases
CAGTGTTACAATTGTTCGCAAGGAAAATAGGGGACATACCCTGGCGTCAGAAAGTGCCTCGGCGAGTGATCGCACGATAT
CGCAACTGCGGCGCGAGATC

Downstream 100 bases:

>100_bases
CGGGGCGAAAAGCGGACCTCACGTCTTCGTTATGACAAAAACGCAACCCTGTCGCGCCGCCGTTCATTGTTTCGGATGTG
TGAAGGGAACCGAAACCAAT

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MCLLPDLRGFARFLTRDTAASDDLVQETVVRALGALEQFRADTNLKAWLFTIQRNIFYEQRRRNQRERLVMSDYAAEPRH
GTQGRPASSGDDVRDLESVFWLLTPLLREALILVGAQEMTHEEAARICGVPVGTMKARVSRARARLAILVARPHEDCGLD
ADLECDPAADEAP

Sequences:

>Translated_173_residues
MCLLPDLRGFARFLTRDTAASDDLVQETVVRALGALEQFRADTNLKAWLFTIQRNIFYEQRRRNQRERLVMSDYAAEPRH
GTQGRPASSGDDVRDLESVFWLLTPLLREALILVGAQEMTHEEAARICGVPVGTMKARVSRARARLAILVARPHEDCGLD
ADLECDPAADEAP
>Mature_173_residues
MCLLPDLRGFARFLTRDTAASDDLVQETVVRALGALEQFRADTNLKAWLFTIQRNIFYEQRRRNQRERLVMSDYAAEPRH
GTQGRPASSGDDVRDLESVFWLLTPLLREALILVGAQEMTHEEAARICGVPVGTMKARVSRARARLAILVARPHEDCGLD
ADLECDPAADEAP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19404; Mature: 19404

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLLPDLRGFARFLTRDTAASDDLVQETVVRALGALEQFRADTNLKAWLFTIQRNIFYEQ
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RRRNQRERLVMSDYAAEPRHGTQGRPASSGDDVRDLESVFWLLTPLLREALILVGAQEMT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
HEEAARICGVPVGTMKARVSRARARLAILVARPHEDCGLDADLECDPAADEAP
HHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCCHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MCLLPDLRGFARFLTRDTAASDDLVQETVVRALGALEQFRADTNLKAWLFTIQRNIFYEQ
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RRRNQRERLVMSDYAAEPRHGTQGRPASSGDDVRDLESVFWLLTPLLREALILVGAQEMT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
HEEAARICGVPVGTMKARVSRARARLAILVARPHEDCGLDADLECDPAADEAP
HHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECCCHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]