| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is secD [H]
Identifier: 162147519
GI number: 162147519
Start: 1755184
End: 1757694
Strand: Reverse
Name: secD [H]
Synonym: GDI_1735
Alternate gene names: 162147519
Gene position: 1757694-1755184 (Counterclockwise)
Preceding gene: 162147520
Following gene: 162147517
Centisome position: 44.56
GC content: 68.1
Gene sequence:
>2511_bases ATGATGTATTACAGCCGGCTCAAATTGGCCTCGGTCGTGGCCGTATGTCTTCTGGGAATGTTGCTCTGCCTTCCCAACGC CCTGCGCCAGCCCGCCCCCGCCGTGCCGTGGCGCCAGATCCACCTGGGGCTGGACCTGCGCGGCGGGTCGTACCTGCTGA TGCAGGTGGACATGAACAGCATCCGCGCCGACCGCCTGCAGACCCTGGCGGACGGCACGCGCCAGGCGCTGCTGGGCGCC GGCCTGGGCTACCGTGACATCGCGACCGACGCGCAGGCCGGAACCGTGACCTTCACGCCCCGCGAGCCCGCCGAGTCCGA TGCGGACCTGAAGACCCTGCGCGCCATGCCGAAGGCGGTGGCCGACGAATTTTCGGTCGATCGCCGGCCTGACGGCAGCA TCGCCATCACGCTGTCGCCCGTCGCCATGCGCCAGCGCGCGGCCGAGGCCGTGACCCAATCGATCGAAATCGTGCGCCGC CGCATCGACGCGACCGGCGCGGTCGATCCCGAGATCACCCGCCAGGGCGAGGATCGCATCATCGTCGAACTGCCCGGCAT CAGCGACCCCGAGCATGTCAAGAAGCTGCTGGGCACCACGGCGAAGATGACCTTCCACATGGTGCAGGAAAACGCCCTGG GCTCTGCCGTGCCCGGTCCCGGCGTCACCCTGCTGCCGATGCTGAACGCGCCGGACCAGAAGCTGCCGGTCAGGGACCAT GTCGATGTCGACGGGTCCGACCTGACCAACGCGGGGGCGGCCATCGACCAGCAGAGCGGCGAATGGGCGGTCAATTTCAC CTTCGATTCCGCCGGCGCGCGGGCCTTCGCCGCGACGACGCAGGCCAATGTCGGCCGTCGCTTCGCCATCGTGCTGGACA ACAAGGTGGTCCAGGCCCCGGTCATCCGCACCGCCATTACCGGCGGCAACGGCCAGATCACCGGCGGCTTCGACGCGCAG TCGGCTACCGACCTGGCGCTGCTGCTGCGGGCCGGCGCGCTGCCGGCGCCGCTGTCGGTCATCGAACAGCGTTCGATCGG CCCGTCGCTGGGCGCCGATTCGATCCGCGCGGGCATGATCAGCCTGGGCGTGGGCTTCGCGCTGGTGATCGTGTTCATGG CGCTGTTCTACGGCCGGTTCGGCTGGTACGCGAACGCCGCCCTGCTGGCCAACCTGGTCCTGATGGTGGCCGTGCTGTCG CTGTTCCAGGCCACGCTGACGCTGCCCGGCATGGCCGGCATGCTGCTGACCCTGGGCATGGCGGTGGATGCGAACATCCT GATCAACGAACGCGTGCGCGAGGAAGTCGGCCGTGGCCGCACCCCGCTGGCGGCGATGCAGACCGGTTTCGAACGCGCGA CCTCCACCATCCTGGACAGCAACGCCACCGCTTTGCTGGCGCATATCATGCTGTTCGTCTTCGGCACCGGCCCGGTCCAG AATTTCGCCCTGACGATCATGATCGGCATCGCGACCACGCTGTTCACCACCCTGCTGCTGTCGCGGATGCTGATGGTGCG CTGGTACGCCCGCACCCGTCCCACCGCCCTTCCAGTTTGGAGGCGCATCATGTTCTCTCGTCCCCTCCTGCGCTTCGTGC CCAAGGGCACCCGGATCAACTTCATGCGCGGCCGTTTCGTCGGCCTAGCGACCTCCGCCGTGCTGTCGATCGCATCCGTG ATCCTGTTCCTGCATCCCGGCCTGACGCTGGGGCTGGACTTCCGGGGCGGCATCGTGGTCGAGGCCCGGACCCAGGGCCC GGCCGATTTCGGCAAGATCCGCGCGGCCCTGGCCGCCCAGCATGTCGAGGCCGCGGGCGTGCAGTCCTTCGGCGCGCCCG ACGACGTGCTGATCCGCCTGGACGCGCCCCCCGCCGGCGACCACGACCGCGAGGCCCATACCCAGGCCATGGTGGATTCC GTGCGCCACGCCGTGGCCACCCTGCCCGGCGCGCAGGTGCTGCGGGCCGACGCGGTGGGCGCGTCGGTGTCGGCCGAACT GTTCCGCAACGGCATGCTGGCCCTGGGCATCAGCCTGCTGATGATCCTGGGCTATATCTGGTTCCGGTTCGAATGGGAGT TCGCGGTCAGCGCGGTCGTCACCCTGGTGCTGGACCTGACCAAGACCATCGGCTTCCTGGTGCTGACGCATTTCGAATTC GACCTGGTGATGGTCGCGGCCATCCTGACGATCCTGGGCTATTCCACCAACGACAAGGTGGTTGTGTACGACCGGGTGCG GGAAAACCTGCGCAAATACCGCACCATGCCCCTGGCCGAGCTGATCGACCTGTCGATCAATGAAACACTGGGCCGCACGC TGGGCACGTCCTCGACGGTCTTCCTGGCGGCGCTGCCGCTGGCGCTGTTCGGCGCCAGCCTGTCCAGCTTCGCCTGGGTG ATGCTGTTCGGGATCGTGGTCGGGACATCGTCCTCGATCTTTATCGCGGCGCCGCTCCTGCTTCTACTGGGCGAGAAGCG ACTTCGGCGCGACGCGCGTCCGGCGCGCTGA
Upstream 100 bases:
>100_bases CCTGCCAGGCGGTTGCATCCTGCGCCACGGCCCGGCATGTTCCCGCCCCACGAGAACTGGGAGCCGGCTGGGCCGGGCGT AAGGAGCACCCCTTTCAGTC
Downstream 100 bases:
>100_bases CCGGCGCCGGCAGGCAGGCGGCGGTCGATCCGCTGTCGGCCTGCCCGACGCAGGCCAGCATCACTGGATGGCGACCTGGA CCCGGCGCTCGCCGCCCTCG
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNSIRADRLQTLADGTRQALLGA GLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRR RIDATGAVDPEITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGGFDAQ SATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLS LFQATLTLPGMAGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRINFMRGRFVGLATSAVLSIASV ILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDS VRHAVATLPGAQVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTVFLAALPLALFGASLSSFAWV MLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR
Sequences:
>Translated_836_residues MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNSIRADRLQTLADGTRQALLGA GLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRR RIDATGAVDPEITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGGFDAQ SATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLS LFQATLTLPGMAGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRINFMRGRFVGLATSAVLSIASV ILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDS VRHAVATLPGAQVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTVFLAALPLALFGASLSSFAWV MLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR >Mature_836_residues MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNSIRADRLQTLADGTRQALLGA GLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRR RIDATGAVDPEITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGGFDAQ SATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLS LFQATLTLPGMAGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRINFMRGRFVGLATSAVLSIASV ILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDS VRHAVATLPGAQVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTVFLAALPLALFGASLSSFAWV MLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=527, Percent_Identity=33.965844402277, Blast_Score=277, Evalue=2e-75, Organism=Escherichia coli, GI1786610, Length=291, Percent_Identity=40.2061855670103, Blast_Score=196, Evalue=7e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 89815; Mature: 89815
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNS CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEEECCCCEEEEEECHHH IRADRLQTLADGTRQALLGAGLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAV HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH ADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRRRIDATGAVDPEITRQGEDRI HHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEE IVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH EEECCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAP CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCEEEEEECCCCHHCC VIRTAITGGNGQITGGFDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMI HHHEEEECCCCEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH SLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLSLFQATLTLPGMAGMLLTLGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ HHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCCCCCEEE FMRGRFVGLATSAVLSIASVILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQ EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH HVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDSVRHAVATLPGAQVLRADAVG HHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC ASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF CHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTV HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCCCCHH FLAALPLALFGASLSSFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCCC >Mature Secondary Structure MMYYSRLKLASVVAVCLLGMLLCLPNALRQPAPAVPWRQIHLGLDLRGGSYLLMQVDMNS CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEEEEECCCCEEEEEECHHH IRADRLQTLADGTRQALLGAGLGYRDIATDAQAGTVTFTPREPAESDADLKTLRAMPKAV HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH ADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRRRIDATGAVDPEITRQGEDRI HHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEE IVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAPDQKLPVRDH EEECCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC VDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAP CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCEEEEEECCCCHHCC VIRTAITGGNGQITGGFDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMI HHHEEEECCCCEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH SLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLSLFQATLTLPGMAGMLLTLGM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQ HHCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH NFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLRFVPKGTRIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCCCCCEEE FMRGRFVGLATSAVLSIASVILFLHPGLTLGLDFRGGIVVEARTQGPADFGKIRAALAAQ EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH HVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDSVRHAVATLPGAQVLRADAVG HHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC ASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIGFLVLTHFEF CHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRTMPLAELIDLSINETLGRTLGTSSTV HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHCCCCCHH FLAALPLALFGASLSSFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRLRRDARPAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]