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The map label for this gene is 162147407

Identifier: 162147407

GI number: 162147407

Start: 1632874

End: 1633797

Strand: Reverse

Name: 162147407

Synonym: GDI_1622

Alternate gene names: NA

Gene position: 1633797-1632874 (Counterclockwise)

Preceding gene: 162147408

Following gene: 162147406

Centisome position: 41.42

GC content: 72.19

Gene sequence:

>924_bases
ATGCATGACGGGAACAGGAAGGCGGGAATGGGATTGACACGGATACGCACGGCGCGGGCACGGACGGCGGAGCCAGCCCC
CCTTGGGTGTGATCCGGCCGATCTGGCGCAGGTCGAATCCGTGGTCGTCGCGTCGGGCACGTCGTTCGGCAAGGGCATGC
GCATCCTGGCGCCCGACCGGCGCTACGGGATGTATGCCGTCTACGCCTTCTGCCGCCTAGTCGACGACGTGGCGGACGAT
GACGGCACGCCCGAGGACAAGAGCGCGCTGCTGCGTGCGTGGCACGAACGGATCGCCGGCCTGTATGCCGGGCGCGCGAC
GGACGCGCTGGACCGCGTGCTGTCGGTGGTCATCGCCCGGTTCGACCTGCGGCAGGCCGATTTCGACGCGGTGATCGACG
GCATGATGATGGACGCCCAGGGCCCCATCGTCGCCCCCGACGAAGCGACCTTCGACCTGTATTGCGACCGCGTGGCCTCG
GCGGTGGGGCGCCTGTCGGTGCGGGTGTTCGGCGATGCGTCGGCCGAGGCCGACCGCGTGGCCTTCCATCTGGGCCGCGC
CCTGCAGATCACGAACATCCTGCGCGACGTGGCCGAGGACGCCCAGCGCGGCCGGCTGTACCTGCCGCGCGAATTGCTGA
CCCGCTTCGACGTGCCGCTGGACGCCGCCCGCGCGGTCCGCGCGCGGGGGCTGGAGGGCGTGGGCCGCGTGCTGGCCGGC
CGGGCGCGCGATCATTTCCGTGCCGCCCACCGGGCGATGGCCCGCTGCGACCGCCACGCGATGCGGCCGGCGCGGCTGAT
GGGCGCCACCTATTCCGCCATCCTGACCGCGCAGGAAAAGCAGGGCTGGCGCCACCCGGAACGGCGGGTTTCGCTGTCGC
GGCCGCGCAAACTGCTGATCGCCGCCCGCGCCCTGGTGGGCTAG

Upstream 100 bases:

>100_bases
CGACGTGCTCCGGGCGGGGCTGGGGGCGCTGCGCGTACTGCCATGAGGGGCCAGGCTTTGTCACGAACGCGATTCCGCCC
TACACAGCCTGCGTCGGCGG

Downstream 100 bases:

>100_bases
GCGCATGGCGGGACATGTCCATATCGTCGGCGGCGGCCTGGCCGGCCTGTCGGCGGCGGTCGAACTGGCCGGCAGCGGCG
TGCGGGTGTCGGTGTACGAG

Product: phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MHDGNRKAGMGLTRIRTARARTAEPAPLGCDPADLAQVESVVVASGTSFGKGMRILAPDRRYGMYAVYAFCRLVDDVADD
DGTPEDKSALLRAWHERIAGLYAGRATDALDRVLSVVIARFDLRQADFDAVIDGMMMDAQGPIVAPDEATFDLYCDRVAS
AVGRLSVRVFGDASAEADRVAFHLGRALQITNILRDVAEDAQRGRLYLPRELLTRFDVPLDAARAVRARGLEGVGRVLAG
RARDHFRAAHRAMARCDRHAMRPARLMGATYSAILTAQEKQGWRHPERRVSLSRPRKLLIAARALVG

Sequences:

>Translated_307_residues
MHDGNRKAGMGLTRIRTARARTAEPAPLGCDPADLAQVESVVVASGTSFGKGMRILAPDRRYGMYAVYAFCRLVDDVADD
DGTPEDKSALLRAWHERIAGLYAGRATDALDRVLSVVIARFDLRQADFDAVIDGMMMDAQGPIVAPDEATFDLYCDRVAS
AVGRLSVRVFGDASAEADRVAFHLGRALQITNILRDVAEDAQRGRLYLPRELLTRFDVPLDAARAVRARGLEGVGRVLAG
RARDHFRAAHRAMARCDRHAMRPARLMGATYSAILTAQEKQGWRHPERRVSLSRPRKLLIAARALVG
>Mature_307_residues
MHDGNRKAGMGLTRIRTARARTAEPAPLGCDPADLAQVESVVVASGTSFGKGMRILAPDRRYGMYAVYAFCRLVDDVADD
DGTPEDKSALLRAWHERIAGLYAGRATDALDRVLSVVIARFDLRQADFDAVIDGMMMDAQGPIVAPDEATFDLYCDRVAS
AVGRLSVRVFGDASAEADRVAFHLGRALQITNILRDVAEDAQRGRLYLPRELLTRFDVPLDAARAVRARGLEGVGRVLAG
RARDHFRAAHRAMARCDRHAMRPARLMGATYSAILTAQEKQGWRHPERRVSLSRPRKLLIAARALVG

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene. Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017828
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 33689; Mature: 33689

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1 ; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDGNRKAGMGLTRIRTARARTAEPAPLGCDPADLAQVESVVVASGTSFGKGMRILAPDR
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCC
RYGMYAVYAFCRLVDDVADDDGTPEDKSALLRAWHERIAGLYAGRATDALDRVLSVVIAR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FDLRQADFDAVIDGMMMDAQGPIVAPDEATFDLYCDRVASAVGRLSVRVFGDASAEADRV
HHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHH
AFHLGRALQITNILRDVAEDAQRGRLYLPRELLTRFDVPLDAARAVRARGLEGVGRVLAG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH
RARDHFRAAHRAMARCDRHAMRPARLMGATYSAILTAQEKQGWRHPERRVSLSRPRKLLI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHCCHHHHH
AARALVG
HHHHHCC
>Mature Secondary Structure
MHDGNRKAGMGLTRIRTARARTAEPAPLGCDPADLAQVESVVVASGTSFGKGMRILAPDR
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCC
RYGMYAVYAFCRLVDDVADDDGTPEDKSALLRAWHERIAGLYAGRATDALDRVLSVVIAR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FDLRQADFDAVIDGMMMDAQGPIVAPDEATFDLYCDRVASAVGRLSVRVFGDASAEADRV
HHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHH
AFHLGRALQITNILRDVAEDAQRGRLYLPRELLTRFDVPLDAARAVRARGLEGVGRVLAG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH
RARDHFRAAHRAMARCDRHAMRPARLMGATYSAILTAQEKQGWRHPERRVSLSRPRKLLI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHCCHHHHH
AARALVG
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]