Click here to switch to the map view.

The map label for this gene is 162147408

Identifier: 162147408

GI number: 162147408

Start: 1633852

End: 1634748

Strand: Reverse

Name: 162147408

Synonym: GDI_1623

Alternate gene names: NA

Gene position: 1634748-1633852 (Counterclockwise)

Preceding gene: 162147409

Following gene: 162147407

Centisome position: 41.45

GC content: 71.91

Gene sequence:

>897_bases
GTGAACGCCATCCAGGGCCAGAAAGAAGCTTCCTCCCCCTCGACCGACGGGGGCGTGTGGGGGACCGAGGACGTCTCGTC
CGGCAAGGGGGCGGAGGACGAGAATTTTCCCGTGGGCTCGCTGCTGATCAGCCGCCGGCTGCGTCCGCATGTCCATGCCT
ATTACGATTTCGCCCGGGTGATCGACGATATCGTCGATACCGACCGGCTGGCGCCCGACGCCAAGATCGCACGGCTGAAT
GCGATGGAGGACGTGGTGCTGGGCCGCCGGGCCGCGCCCCCGCGCCGCGACGCGCAGACGGCGGCGCGCGTGGCCCACGC
GCTGGCCGTGACCGGCGTGCCGGTGACGACGGCGACCGACCTGATCGTGGCCTTTCGCCAGGACGCCGTGAAGAACCGGT
ACGAATCGTGGGACGAACTGGTCGAATATTGCCGCTATTCCGCCAATCCGGTCGGCCGCTTCCTGCTGTGCCTGCATGGC
GAGGACCCGGCCACCTTCGCGCCTTCGGACGCGCTGTGCACGTCGTTGCAGGTGCTGAACCATCTGCAGGACTGTGCTGC
CGACCTGCGGGCGCTGGACCGGTGCTACCTGCCCCTGCCGTGGCTGGCGCGCGAGGGCGCGTCGCTGGACGATCTGGGGG
CCTGCCGGGCGTCGCCGGGGCTGCGCCGGGTGATCGACGCCCTGCTGGACCGGGTGGACGACCTGAACGACGAAGCCGCC
CGCCTGCCGGGCCTGGTCCGCGACCGGCGCATGCGGCTGGAGGCGGCGGTGATCGTGGGGCTGGCCCGGCGCCTGACCGC
GCGCCTGCGGCGCGAGGACCCGCTGGCCGGGCGCGTGAAACTGTCGCGCGGCGACGTGCTCCGGGCGGGGCTGGGGGCGC
TGCGCGTACTGCCATGA

Upstream 100 bases:

>100_bases
GCCATCGACCACCATCGCGGCCGTGGCGTGGTGTGGAAGAGCCGTGCCTATCTCGAACCGACCGGGGCCGGCGGGCCCGT
GCCAGATGACAGGACATGAC

Downstream 100 bases:

>100_bases
GGGGCCAGGCTTTGTCACGAACGCGATTCCGCCCTACACAGCCTGCGTCGGCGGATGCATGACGGGAACAGGAAGGCGGG
AATGGGATTGACACGGATAC

Product: phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNAIQGQKEASSPSTDGGVWGTEDVSSGKGAEDENFPVGSLLISRRLRPHVHAYYDFARVIDDIVDTDRLAPDAKIARLN
AMEDVVLGRRAAPPRRDAQTAARVAHALAVTGVPVTTATDLIVAFRQDAVKNRYESWDELVEYCRYSANPVGRFLLCLHG
EDPATFAPSDALCTSLQVLNHLQDCAADLRALDRCYLPLPWLAREGASLDDLGACRASPGLRRVIDALLDRVDDLNDEAA
RLPGLVRDRRMRLEAAVIVGLARRLTARLRREDPLAGRVKLSRGDVLRAGLGALRVLP

Sequences:

>Translated_298_residues
MNAIQGQKEASSPSTDGGVWGTEDVSSGKGAEDENFPVGSLLISRRLRPHVHAYYDFARVIDDIVDTDRLAPDAKIARLN
AMEDVVLGRRAAPPRRDAQTAARVAHALAVTGVPVTTATDLIVAFRQDAVKNRYESWDELVEYCRYSANPVGRFLLCLHG
EDPATFAPSDALCTSLQVLNHLQDCAADLRALDRCYLPLPWLAREGASLDDLGACRASPGLRRVIDALLDRVDDLNDEAA
RLPGLVRDRRMRLEAAVIVGLARRLTARLRREDPLAGRVKLSRGDVLRAGLGALRVLP
>Mature_298_residues
MNAIQGQKEASSPSTDGGVWGTEDVSSGKGAEDENFPVGSLLISRRLRPHVHAYYDFARVIDDIVDTDRLAPDAKIARLN
AMEDVVLGRRAAPPRRDAQTAARVAHALAVTGVPVTTATDLIVAFRQDAVKNRYESWDELVEYCRYSANPVGRFLLCLHG
EDPATFAPSDALCTSLQVLNHLQDCAADLRALDRCYLPLPWLAREGASLDDLGACRASPGLRRVIDALLDRVDDLNDEAA
RLPGLVRDRRMRLEAAVIVGLARRLTARLRREDPLAGRVKLSRGDVLRAGLGALRVLP

Specific function: Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017827
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: NA

Molecular weight: Translated: 32574; Mature: 32574

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIQGQKEASSPSTDGGVWGTEDVSSGKGAEDENFPVGSLLISRRLRPHVHAYYDFARV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
IDDIVDTDRLAPDAKIARLNAMEDVVLGRRAAPPRRDAQTAARVAHALAVTGVPVTTATD
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LIVAFRQDAVKNRYESWDELVEYCRYSANPVGRFLLCLHGEDPATFAPSDALCTSLQVLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
HLQDCAADLRALDRCYLPLPWLAREGASLDDLGACRASPGLRRVIDALLDRVDDLNDEAA
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
RLPGLVRDRRMRLEAAVIVGLARRLTARLRREDPLAGRVKLSRGDVLRAGLGALRVLP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNAIQGQKEASSPSTDGGVWGTEDVSSGKGAEDENFPVGSLLISRRLRPHVHAYYDFARV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHH
IDDIVDTDRLAPDAKIARLNAMEDVVLGRRAAPPRRDAQTAARVAHALAVTGVPVTTATD
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
LIVAFRQDAVKNRYESWDELVEYCRYSANPVGRFLLCLHGEDPATFAPSDALCTSLQVLN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
HLQDCAADLRALDRCYLPLPWLAREGASLDDLGACRASPGLRRVIDALLDRVDDLNDEAA
HHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
RLPGLVRDRRMRLEAAVIVGLARRLTARLRREDPLAGRVKLSRGDVLRAGLGALRVLP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]