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The map label for this gene is rbsC [H]

Identifier: 162147288

GI number: 162147288

Start: 1499918

End: 1500949

Strand: Reverse

Name: rbsC [H]

Synonym: GDI_1493

Alternate gene names: 162147288

Gene position: 1500949-1499918 (Counterclockwise)

Preceding gene: 162147289

Following gene: 162147287

Centisome position: 38.05

GC content: 71.22

Gene sequence:

>1032_bases
ATGAAGAGTTCCACCCTGAACATGGGGCGTGCCGCGCCGGCCCCCACCTCAACCCTGGGCGGCCCGCAACGCGCGCCCGT
CGCGTGGCGCGCGCTGCTGGCGCGGCGCGAAACCGCGCTGCTGGCCGTGATCGCGCTGGTGGTGGCGGTGGTCAGCCTGG
GTGCGCATGGCGGGTTCTGGACCCGCGTCAACCTGGACGGGCTGATGGTCACCAGCGCCATCACCGCCGTGCCGGCGGCG
GGCATGACGCTGGTCATCCTGACCGGCGGGATCGACGCCTCGATCGGTTCGATGCTGGGGCTGGTCTCGGCCATCGGGGG
ATTGCTGTTCGTCGCGGGGTGGCCGGTCGCGGTGGTGGTGCCGGTGTTCCTGCTGGCCGGGGCCGCGCTGGGCTGGATCA
ACGGCCTGGTCATCCTGTGCGGCCGCGTGCCGCCGATCGTCTGTACGCTGGGCACGCTCAGCATCTTTCGCATGGGCGTG
TTCCTGATGATGGGCAGCGACTGGATCACCGCCCTGCCGCCGGGGCTGACGCGGTTTTTCGTGGCCGACCATCTGGGCCC
CCTGCCGGGCGCCGCCGTCATCGCGCTGGCCGTCATGGCGGTGCTGGCGGTCTTCCTGCGGGTCCACCGCACCGGCCGCC
GCCTGTTCGCGATCGGCAATAACGAGGAAGCGGCCCGCCTGGTCGGCATTCCGGTGCGACGGCTGCGCTGGATGACCTAC
GTGCTGCTGGGCGCCTGCGTGGGGCTGGGCGCGCTGATGCGGCTGGGCCAGTCCCCCATCGTCCAGACCACGACCGGCAG
CGGCTTCGAACTGGGCGTGATCGCGGCGGTGGTGCTGGGCGGCACCGAACTGTCGGGCGGGCGCGGCGGCATGTTCGGCA
CGTTCCTGGGCACGCTGGTCGTGGGCCTGGTCGGCGACGCCATCGTGCTGATGCATATCCAGCCGTTCTGGAGCGGCGTC
GTGCTCGGCTTCATCATCCTCGCATCCGTGGGACTGAACGAGGGCCGCCGGGCCCGGCAGGTGGTATCATGA

Upstream 100 bases:

>100_bases
ATCGTTTCCAGCGGGATCGCGAGCAGGGGGCCGCGCCGGCGGCCGAACGGGTGCTGGCCGCCGCCATCGGCGCGGCGACG
ACCGGCCAGGAGCATGCGGC

Downstream 100 bases:

>100_bases
GCGGCTTCCGGTCCGGACGGATCGTCATCCTGGGGCTGTTCGCCCTGCTGGTCCTGGGCGGATTCGCCTTCGGCAACCCG
ACCATCCTGTCGGCCGACAA

Product: ribose ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKSSTLNMGRAAPAPTSTLGGPQRAPVAWRALLARRETALLAVIALVVAVVSLGAHGGFWTRVNLDGLMVTSAITAVPAA
GMTLVILTGGIDASIGSMLGLVSAIGGLLFVAGWPVAVVVPVFLLAGAALGWINGLVILCGRVPPIVCTLGTLSIFRMGV
FLMMGSDWITALPPGLTRFFVADHLGPLPGAAVIALAVMAVLAVFLRVHRTGRRLFAIGNNEEAARLVGIPVRRLRWMTY
VLLGACVGLGALMRLGQSPIVQTTTGSGFELGVIAAVVLGGTELSGGRGGMFGTFLGTLVVGLVGDAIVLMHIQPFWSGV
VLGFIILASVGLNEGRRARQVVS

Sequences:

>Translated_343_residues
MKSSTLNMGRAAPAPTSTLGGPQRAPVAWRALLARRETALLAVIALVVAVVSLGAHGGFWTRVNLDGLMVTSAITAVPAA
GMTLVILTGGIDASIGSMLGLVSAIGGLLFVAGWPVAVVVPVFLLAGAALGWINGLVILCGRVPPIVCTLGTLSIFRMGV
FLMMGSDWITALPPGLTRFFVADHLGPLPGAAVIALAVMAVLAVFLRVHRTGRRLFAIGNNEEAARLVGIPVRRLRWMTY
VLLGACVGLGALMRLGQSPIVQTTTGSGFELGVIAAVVLGGTELSGGRGGMFGTFLGTLVVGLVGDAIVLMHIQPFWSGV
VLGFIILASVGLNEGRRARQVVS
>Mature_343_residues
MKSSTLNMGRAAPAPTSTLGGPQRAPVAWRALLARRETALLAVIALVVAVVSLGAHGGFWTRVNLDGLMVTSAITAVPAA
GMTLVILTGGIDASIGSMLGLVSAIGGLLFVAGWPVAVVVPVFLLAGAALGWINGLVILCGRVPPIVCTLGTLSIFRMGV
FLMMGSDWITALPPGLTRFFVADHLGPLPGAAVIALAVMAVLAVFLRVHRTGRRLFAIGNNEEAARLVGIPVRRLRWMTY
VLLGACVGLGALMRLGQSPIVQTTTGSGFELGVIAAVVLGGTELSGGRGGMFGTFLGTLVVGLVGDAIVLMHIQPFWSGV
VLGFIILASVGLNEGRRARQVVS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=327, Percent_Identity=38.8379204892966, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1790191, Length=330, Percent_Identity=31.8181818181818, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790524, Length=315, Percent_Identity=27.9365079365079, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787793, Length=252, Percent_Identity=33.7301587301587, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI145693152, Length=286, Percent_Identity=29.7202797202797, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787794, Length=276, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082395, Length=324, Percent_Identity=30.2469135802469, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788471, Length=290, Percent_Identity=30, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=36.8421052631579, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=30.4511278195489, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35299; Mature: 35299

Theoretical pI: Translated: 12.08; Mature: 12.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSTLNMGRAAPAPTSTLGGPQRAPVAWRALLARRETALLAVIALVVAVVSLGAHGGFW
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TRVNLDGLMVTSAITAVPAAGMTLVILTGGIDASIGSMLGLVSAIGGLLFVAGWPVAVVV
EEEECCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
PVFLLAGAALGWINGLVILCGRVPPIVCTLGTLSIFRMGVFLMMGSDWITALPPGLTRFF
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHH
VADHLGPLPGAAVIALAVMAVLAVFLRVHRTGRRLFAIGNNEEAARLVGIPVRRLRWMTY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCHHHHHHHHHH
VLLGACVGLGALMRLGQSPIVQTTTGSGFELGVIAAVVLGGTELSGGRGGMFGTFLGTLV
HHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VGLVGDAIVLMHIQPFWSGVVLGFIILASVGLNEGRRARQVVS
HHHHHHHHEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHCC
>Mature Secondary Structure
MKSSTLNMGRAAPAPTSTLGGPQRAPVAWRALLARRETALLAVIALVVAVVSLGAHGGFW
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TRVNLDGLMVTSAITAVPAAGMTLVILTGGIDASIGSMLGLVSAIGGLLFVAGWPVAVVV
EEEECCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
PVFLLAGAALGWINGLVILCGRVPPIVCTLGTLSIFRMGVFLMMGSDWITALPPGLTRFF
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHH
VADHLGPLPGAAVIALAVMAVLAVFLRVHRTGRRLFAIGNNEEAARLVGIPVRRLRWMTY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCHHHHHHHHHH
VLLGACVGLGALMRLGQSPIVQTTTGSGFELGVIAAVVLGGTELSGGRGGMFGTFLGTLV
HHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VGLVGDAIVLMHIQPFWSGVVLGFIILASVGLNEGRRARQVVS
HHHHHHHHEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]