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The map label for this gene is rbsC [H]

Identifier: 162147287

GI number: 162147287

Start: 1498944

End: 1499921

Strand: Reverse

Name: rbsC [H]

Synonym: GDI_1492

Alternate gene names: 162147287

Gene position: 1499921-1498944 (Counterclockwise)

Preceding gene: 162147288

Following gene: 162147283

Centisome position: 38.03

GC content: 69.94

Gene sequence:

>978_bases
ATGAGCGGCTTCCGGTCCGGACGGATCGTCATCCTGGGGCTGTTCGCCCTGCTGGTCCTGGGCGGATTCGCCTTCGGCAA
CCCGACCATCCTGTCGGCCGACAACGTATCCAGCATGGCGGTGTTCGCCGTGGAACTGGGCATCATCGCCTTCGGCCAGG
GGCTGGTGATCCAGGGCGGCGACGGGGCCATCGACCTGAGCGTCGGCGCGATGTCCGGGCTGGCACAGGTCCTGACCGCC
CTGTTCATCTCGCGCGGCCTGCCCTGGCCCGTGGGGGTCGGCATCGGCATCGCCTCCGGCGCCGCCATGGGGGGCTGCAA
CGCCGCCGCGATCGCGCGCTTCAGGATTCCGCCCATCATCGCGACGCTGGGCACGATGTTCGCCTTTTCCGGCCTGGCGC
TGATCGCGTCGGACGGCAACACCATCGACCTGACCGCCGCCCCCGCGCCCTTCCTGGCCATGGGGCAGGGCACCGTCCTG
GGGGTGCCGTTCCAGATCCTGTGCCTCTACCTGCCGCTGCTGGCCGTCCTGGTGGTGGTGCAGCACCGCAGCCGGTTCGG
CCGCGCCCTGTACCTGGTGGGCACGAACGCCACCGCCGCCTGGCTGGCGGGCATACCGGTCAAGCGGCTGCGGGCGGCGA
CCTATGTGCTGTCGGGCGCGCTGTCCGGGCTGGCCGGGGTGATCGCGGCGGCGCGGCTGGGCACGGCCACACCCGACGGG
GTGCCGGAAGCGAACCTGATCAGCATCGCGATCGTCGTGCTGGGGGGCGCCAGCATCTTCGGCGGGGACGGATCGCCCAT
CGGCACCGCGATCGCCACCATCGCCATCGCGGTGGTCAATTACGGGCTGAACTACAACGATTTCAACCCGACCCTGCAGG
CCGGCATGATGGGCCTGATCCTGGTGCTGATCGTGCTGGTGGAAAACGTCGTGGTCGCGGCGGTGCGCGGTTACCAGACC
AGCCCCGGCAGAACGTAA

Upstream 100 bases:

>100_bases
TGATGCATATCCAGCCGTTCTGGAGCGGCGTCGTGCTCGGCTTCATCATCCTCGCATCCGTGGGACTGAACGAGGGCCGC
CGGGCCCGGCAGGTGGTATC

Downstream 100 bases:

>100_bases
TCCGGCCACACCCCATGCCGCACGAACGCGGCCCGCAGCGCGGCGGGGGCGGCATCGGCCAGGATGCCCGTCCGAACCAG
CGCGCTGTCGGCGCCGAACC

Product: ribose ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSGFRSGRIVILGLFALLVLGGFAFGNPTILSADNVSSMAVFAVELGIIAFGQGLVIQGGDGAIDLSVGAMSGLAQVLTA
LFISRGLPWPVGVGIGIASGAAMGGCNAAAIARFRIPPIIATLGTMFAFSGLALIASDGNTIDLTAAPAPFLAMGQGTVL
GVPFQILCLYLPLLAVLVVVQHRSRFGRALYLVGTNATAAWLAGIPVKRLRAATYVLSGALSGLAGVIAAARLGTATPDG
VPEANLISIAIVVLGGASIFGGDGSPIGTAIATIAIAVVNYGLNYNDFNPTLQAGMMGLILVLIVLVENVVVAAVRGYQT
SPGRT

Sequences:

>Translated_325_residues
MSGFRSGRIVILGLFALLVLGGFAFGNPTILSADNVSSMAVFAVELGIIAFGQGLVIQGGDGAIDLSVGAMSGLAQVLTA
LFISRGLPWPVGVGIGIASGAAMGGCNAAAIARFRIPPIIATLGTMFAFSGLALIASDGNTIDLTAAPAPFLAMGQGTVL
GVPFQILCLYLPLLAVLVVVQHRSRFGRALYLVGTNATAAWLAGIPVKRLRAATYVLSGALSGLAGVIAAARLGTATPDG
VPEANLISIAIVVLGGASIFGGDGSPIGTAIATIAIAVVNYGLNYNDFNPTLQAGMMGLILVLIVLVENVVVAAVRGYQT
SPGRT
>Mature_324_residues
SGFRSGRIVILGLFALLVLGGFAFGNPTILSADNVSSMAVFAVELGIIAFGQGLVIQGGDGAIDLSVGAMSGLAQVLTAL
FISRGLPWPVGVGIGIASGAAMGGCNAAAIARFRIPPIIATLGTMFAFSGLALIASDGNTIDLTAAPAPFLAMGQGTVLG
VPFQILCLYLPLLAVLVVVQHRSRFGRALYLVGTNATAAWLAGIPVKRLRAATYVLSGALSGLAGVIAAARLGTATPDGV
PEANLISIAIVVLGGASIFGGDGSPIGTAIATIAIAVVNYGLNYNDFNPTLQAGMMGLILVLIVLVENVVVAAVRGYQTS
PGRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=284, Percent_Identity=32.7464788732394, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787794, Length=305, Percent_Identity=32.1311475409836, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=31.0975609756098, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1790191, Length=285, Percent_Identity=32.280701754386, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790524, Length=236, Percent_Identity=33.0508474576271, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789992, Length=338, Percent_Identity=27.810650887574, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082395, Length=295, Percent_Identity=30.1694915254237, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787793, Length=210, Percent_Identity=29.0476190476191, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788471, Length=290, Percent_Identity=30, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32661; Mature: 32530

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFRSGRIVILGLFALLVLGGFAFGNPTILSADNVSSMAVFAVELGIIAFGQGLVIQGG
CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHEECCCEEEECC
DGAIDLSVGAMSGLAQVLTALFISRGLPWPVGVGIGIASGAAMGGCNAAAIARFRIPPII
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCHHH
ATLGTMFAFSGLALIASDGNTIDLTAAPAPFLAMGQGTVLGVPFQILCLYLPLLAVLVVV
HHHHHHHHHCCEEEEECCCCEEEEEECCCCCEEECCCCEECCCHHHHHHHHHHHHHHHHH
QHRSRFGRALYLVGTNATAAWLAGIPVKRLRAATYVLSGALSGLAGVIAAARLGTATPDG
HHHHHCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VPEANLISIAIVVLGGASIFGGDGSPIGTAIATIAIAVVNYGLNYNDFNPTLQAGMMGLI
CCCCHHHEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LVLIVLVENVVVAAVRGYQTSPGRT
HHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SGFRSGRIVILGLFALLVLGGFAFGNPTILSADNVSSMAVFAVELGIIAFGQGLVIQGG
CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHEECCCEEEECC
DGAIDLSVGAMSGLAQVLTALFISRGLPWPVGVGIGIASGAAMGGCNAAAIARFRIPPII
CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCHHH
ATLGTMFAFSGLALIASDGNTIDLTAAPAPFLAMGQGTVLGVPFQILCLYLPLLAVLVVV
HHHHHHHHHCCEEEEECCCCEEEEEECCCCCEEECCCCEECCCHHHHHHHHHHHHHHHHH
QHRSRFGRALYLVGTNATAAWLAGIPVKRLRAATYVLSGALSGLAGVIAAARLGTATPDG
HHHHHCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VPEANLISIAIVVLGGASIFGGDGSPIGTAIATIAIAVVNYGLNYNDFNPTLQAGMMGLI
CCCCHHHEEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LVLIVLVENVVVAAVRGYQTSPGRT
HHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]