Click here to switch to the map view.

The map label for this gene is nifU [C]

Identifier: 162147187

GI number: 162147187

Start: 1397071

End: 1397634

Strand: Direct

Name: nifU [C]

Synonym: GDI_1392

Alternate gene names: 162147187

Gene position: 1397071-1397634 (Clockwise)

Preceding gene: 162147184

Following gene: 162147188

Centisome position: 35.42

GC content: 65.96

Gene sequence:

>564_bases
ATGTTCATCGAAACCGAAGATACCCCTAATCCCGCGACCCTGAAGTTCCTTCCGGGCCGTACCATCGTGCCCGGTCGCGC
CACGGCGGATTTCGTCAGCCCCGATGCGGTGGCGGGCCGGTCGAAGCTGGCCGACGCCCTGTTCGGCCAACCGGGCGTCG
CGCGCGTCTTCCTGGGTGGTGATTTCGTGGCGGTGACCAAGGACGAGGCCACCGACTGGTCGGTGCTGAAGCCGCAGCTT
CTGTCCGTGCTGGTCGATTTCTTCGTCTCCGGCATGCCGGCGATCGAGGACGACGCGGCGGTCGAGGAAGAACTGATCGC
CCCGGAGGACGAGGAGATCGTCCGCCAGATCAAGGAATTGCTGGACACGCGGGTGCGGCCGGCCGTGGCCGGCGACGGGG
GGGATATCGTGTTTCGCGGCTATCGCGACGGGGTCGTGCGGTTGACGATGCAGGGCGCGTGCTCGGGCTGTCCGTCCTCG
CGCGCGACGCTGAAGCATGGTGTCGAGAACATGCTGCGGCATTACGTGCCGGAAGTGGTTTCGGTCGAGCAGGTGGACGC
ATAA

Upstream 100 bases:

>100_bases
CATCCGGGGGCTTGTTTCGGCGGCCATCCTGGCTCATCTGGATTGTAATCGGACTGGTCGAGTCCGCTTTCTGCTGCTCC
CCTGGAACAAAGGCCCCCCG

Downstream 100 bases:

>100_bases
CAGGAAAACGACATGGTTCTTGACGAGGCCGGGCTGGACCTGCTGTTCCGTACGGCACGCACGCCCGGGCGCTGGCGCGA
CGAGCCGGTGCCGGACGAAC

Product: nitrogen fixation protein

Products: NA

Alternate protein names: NifU Domain Protein; Nitrogen-Fixing NifU Domain Protein; NifU Domain-Containing Protein; Nitrogen-Fixing NifU-Like; Nitrogen Fixation Protein; NifU Related Protein; NifU-Like Domain Protein; NifU-Like Protein; NifU-Like Domain-Containing Protein; NifU Protein; Nitrogen-Fixing NifU-Like Protein; Scaffold Protein Nfu/Nifu; NifU Family Protein; Thioredoxin-Like Protein; Nitrogen-Fixing NifU; NifU Iron-Sulphur Cluster Scaffold Protein; Nif System Fes Cluster Assembly Nifu Family Protein; Thioredoxin-Related Protein; Thioredoxin-Like Domain Protein; Scaffold Protein Nfu/NifU N Terminal Domain Protein; Nitrogen-Fixing Nifu Domain Protein; Nitrogen-Fixing Protein NifU; Nitrogen-Fixing NifU Domain-Containing Protein; Nitrogen Fixing Thioredoxin-Like Protein NifU; Nitrogen-Fixing Protein; NFU1 Iron-Sulfur Cluster Scaffold-Like Protein; Fe-S Cluster Assembly Protein NFU; Nifu Protein; NifU Domain Containing Protein; HIRA-Interacting; Nitrogen-Fixing NifU C-Terminal; Scaffold Protein Nfu/NifU-Like Protein; Scaffold Protein Nfu/NifU N Terminal; NitrogeN-Fixing Nifu Domain Protein; Thioredoxin

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGGDFVAVTKDEATDWSVLKPQL
LSVLVDFFVSGMPAIEDDAAVEEELIAPEDEEIVRQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSS
RATLKHGVENMLRHYVPEVVSVEQVDA

Sequences:

>Translated_187_residues
MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGGDFVAVTKDEATDWSVLKPQL
LSVLVDFFVSGMPAIEDDAAVEEELIAPEDEEIVRQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSS
RATLKHGVENMLRHYVPEVVSVEQVDA
>Mature_187_residues
MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGGDFVAVTKDEATDWSVLKPQL
LSVLVDFFVSGMPAIEDDAAVEEELIAPEDEEIVRQIKELLDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSS
RATLKHGVENMLRHYVPEVVSVEQVDA

Specific function: Unknown

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI50593025, Length=186, Percent_Identity=51.6129032258064, Blast_Score=197, Evalue=4e-51,
Organism=Homo sapiens, GI50593021, Length=186, Percent_Identity=51.6129032258064, Blast_Score=197, Evalue=5e-51,
Organism=Homo sapiens, GI50593023, Length=101, Percent_Identity=52.4752475247525, Blast_Score=120, Evalue=9e-28,
Organism=Homo sapiens, GI50593019, Length=101, Percent_Identity=52.4752475247525, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17541876, Length=187, Percent_Identity=51.3368983957219, Blast_Score=189, Evalue=8e-49,
Organism=Saccharomyces cerevisiae, GI6322811, Length=206, Percent_Identity=38.3495145631068, Blast_Score=139, Evalue=3e-34,
Organism=Drosophila melanogaster, GI45551492, Length=185, Percent_Identity=54.0540540540541, Blast_Score=202, Evalue=9e-53,
Organism=Drosophila melanogaster, GI24643765, Length=185, Percent_Identity=54.0540540540541, Blast_Score=202, Evalue=9e-53,
Organism=Drosophila melanogaster, GI45556188, Length=185, Percent_Identity=54.0540540540541, Blast_Score=202, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20114; Mature: 20114

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGG
CCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
DFVAVTKDEATDWSVLKPQLLSVLVDFFVSGMPAIEDDAAVEEELIAPEDEEIVRQIKEL
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
LDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSSRATLKHGVENMLRHYVPEVV
HHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SVEQVDA
HHHHCCC
>Mature Secondary Structure
MFIETEDTPNPATLKFLPGRTIVPGRATADFVSPDAVAGRSKLADALFGQPGVARVFLGG
CCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
DFVAVTKDEATDWSVLKPQLLSVLVDFFVSGMPAIEDDAAVEEELIAPEDEEIVRQIKEL
CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
LDTRVRPAVAGDGGDIVFRGYRDGVVRLTMQGACSGCPSSRATLKHGVENMLRHYVPEVV
HHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SVEQVDA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA