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The map label for this gene is bfrD [H]

Identifier: 162147133

GI number: 162147133

Start: 1335168

End: 1337495

Strand: Direct

Name: bfrD [H]

Synonym: GDI_1338

Alternate gene names: 162147133

Gene position: 1335168-1337495 (Clockwise)

Preceding gene: 162147132

Following gene: 162147134

Centisome position: 33.85

GC content: 63.87

Gene sequence:

>2328_bases
TTGTCCACAGGAAATATCGCGTCGAAAAAATCCGGGGGGACCGTTTCCAATCTTACCCTCTGCGGTACCACCCTGCTGCT
GGGGGCCCAGTCCGTCGCCCATGCTGCCGACACGCTGAAGCGCGACGAGAAAAAGAAGAAGACGCACGACCCCGCGATCC
ACCAGCAGGGTCGTCCGCTTCCGGCGCACGAGGAAATCGACGTCGTCGGGCAGTGGCAGCACCGGTCGCCCAAATTCACC
GCCCCGCTGCTGGACACGCCCAAGAGCGTGACGATCATTTCACGCGAATTGCTGGACCAGACCGCATCCCACACGCTGGT
CGACGCCCTGCGCAACGTCCCGGGCATCACGATGGGGGCGGGCGAAGGCGGGAACCCGGTCGGCGACCGGCCGTTCCTGC
GCGGTTTCGATGCGCAGTCCAGCACGTTCGTCGACGGCCTTCGCGACGTCGGCGCGCAATCGCGCGAGACGTTCAACGTC
GAGGCCGTGGAGGTCATCAAGGGCGATTCCGGCGCGATCAGCGGGCGGGCGGGTGCCGGCGGGTCCATCGTGATCGACAG
CAAGATGCCCAGGCTGAAGAACTCGCTCGATGCCAGCCTGGGCTTCGGCAATGCCGGTTACAAGCGCGGGACGCTGGACG
GCAACTGGCAGTTTTCGCGGACCGGCGCCTTCCGCCTGAACCTGATGGGCGACGACGAAAACAAGGCTGGTCGGGGACCC
ACAGAATTCAAGCGGTATGGGGTGGCGCCCTCGGTCTCGCTGGGGCTGGGCACGCCCGACCGGGTCACCCTGATGTATTA
CCACATGCAGAACGACGACCTGCCCGATGTCGGCATTCCCTACGACAATCCCACCTTCAACGCCCGCACCGACGGCGCCC
CGCGCCTGATGACGGCCGGCAACGGCGCGCCCGTCAAGGTCCCGTTCGACACCTGGTACGGCCTGGTCAACCGCGATTCC
GACCAGGATTCGATCGATATGGGCACGCTGCGGCTGGAGCACGATTTCAACAGCCACCTGCATATCCGCAACACGACGCG
CTATTCCGAGACCAGCCAGAACGACCTGTGGACCATGCCGGACGACAGCCAGGGCAACATCTATTACGGCTATGTCTACC
GGCGTCTCAACAGCCGCGTCTCGACGTTCGATACGGCCATAAACCAGACCGACTTCTATGGAACGGTGTCCCTCCTGGGG
TTCCGCAACCAGTTTTCGACCGGCATGGAATTCACGCGCGAACAGGGCAAGAACGATACCGACACGGCTTATGTGAACGG
CGTCAACGTCGCGTCCGGCACGAATTTCACGCATTGCGCCACGGCGCTCGCCTTCACGTCCCATACCTGTACAACGCTTT
CCAATCCCAATCCCAACGATATGTGGACCGGCGATATCCGCCGGACGGGAAACCCCAACAGCACGCGCATGGATACCAAG
GCGGTCTACCTGACCGACACGGTCACCTTCATGCCGCAGCTTCTGGGAAATTTCGGCGTCCGGCTGGACAATGTCCAAAG
CACGTACCGCGCGCAGGCGGGGGAATACGGGCGCGGGGACAACCTGTTCACCTACCAGGGCGGCCTGGTCTACAAGCCCG
CCCGCAACGGATCGATCTATGCGTCCTACGCGACGTCGGCGATTCCGCCGGGCAACTCGGTGGGACAGGGGGCGGACGAC
ATCAGCCTCGGCGCGGACCGGACCGGCAATATCGGCAGCGTGCTGAAGCCGGAACGCGACCGCACGATCGAGGTCGGCAC
CAAATGGAACGTCCTGCATGACAGGGTGACCCTGACGGGCGCGCTGTTCCAGATCGATACGACGAATTTCAAGATCGCCA
CCGCCTCGGGCGGGATCTCGAACGGCGGCAGCAAGCGCACGCGCGGGGGCGAGGTCGGCGTTTCGGGCCACATCACCCGC
GACTGGTCCATGACGGCGGGCTACAGCTATCTGGACGCGCGCCTGGTGCAGGCGGGCGGCAGCGGTGCCGCCGCCGGCCT
GATGAACGGACGCCGCGCGCCGAACACGCCGGAAAACAGCCTGGCATTGTGGAACACCTACGACATCACCCCGGGGTTCA
AGGTCGGTTCAGGCGTCTATTACATGGGCAAGGTCTATGGCGCGGATTCGCCCACGGCGCCGAAATACGTGCCCGGCTAC
TGGCGGTTCGACATCATGGCCAGCTACCGCTTCCTGAAGCACTACACGCTTCAGCTCAACATCCAGAACCTGACGAACAA
GCGGTATTTCACCCAGGCCTACGTGACCCATTACGCGCTGCAGGCCGCGGGCCGCACGGCCTTCGTCACGCTGAATGCGC
ATTTCTGA

Upstream 100 bases:

>100_bases
TCCCCGATTGACACGCTGTTACACTCTCGTTACGTGCTTGTTGAGAATGATTATCATTCGTGACAAATTATGTCAAATTT
TGCGGGGCACGCCAGAATGA

Downstream 100 bases:

>100_bases
TTCCTCCGCTGCCGCGCCTGAACAGGTACCGGAACAGGTGTTCGCCACCGTTACCGGCCTGGCGCGGTCGGGCGATCCGG
CCGCCCAGCTCGCGCTGGGG

Product: tonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 775; Mature: 774

Protein sequence:

>775_residues
MSTGNIASKKSGGTVSNLTLCGTTLLLGAQSVAHAADTLKRDEKKKKTHDPAIHQQGRPLPAHEEIDVVGQWQHRSPKFT
APLLDTPKSVTIISRELLDQTASHTLVDALRNVPGITMGAGEGGNPVGDRPFLRGFDAQSSTFVDGLRDVGAQSRETFNV
EAVEVIKGDSGAISGRAGAGGSIVIDSKMPRLKNSLDASLGFGNAGYKRGTLDGNWQFSRTGAFRLNLMGDDENKAGRGP
TEFKRYGVAPSVSLGLGTPDRVTLMYYHMQNDDLPDVGIPYDNPTFNARTDGAPRLMTAGNGAPVKVPFDTWYGLVNRDS
DQDSIDMGTLRLEHDFNSHLHIRNTTRYSETSQNDLWTMPDDSQGNIYYGYVYRRLNSRVSTFDTAINQTDFYGTVSLLG
FRNQFSTGMEFTREQGKNDTDTAYVNGVNVASGTNFTHCATALAFTSHTCTTLSNPNPNDMWTGDIRRTGNPNSTRMDTK
AVYLTDTVTFMPQLLGNFGVRLDNVQSTYRAQAGEYGRGDNLFTYQGGLVYKPARNGSIYASYATSAIPPGNSVGQGADD
ISLGADRTGNIGSVLKPERDRTIEVGTKWNVLHDRVTLTGALFQIDTTNFKIATASGGISNGGSKRTRGGEVGVSGHITR
DWSMTAGYSYLDARLVQAGGSGAAAGLMNGRRAPNTPENSLALWNTYDITPGFKVGSGVYYMGKVYGADSPTAPKYVPGY
WRFDIMASYRFLKHYTLQLNIQNLTNKRYFTQAYVTHYALQAAGRTAFVTLNAHF

Sequences:

>Translated_775_residues
MSTGNIASKKSGGTVSNLTLCGTTLLLGAQSVAHAADTLKRDEKKKKTHDPAIHQQGRPLPAHEEIDVVGQWQHRSPKFT
APLLDTPKSVTIISRELLDQTASHTLVDALRNVPGITMGAGEGGNPVGDRPFLRGFDAQSSTFVDGLRDVGAQSRETFNV
EAVEVIKGDSGAISGRAGAGGSIVIDSKMPRLKNSLDASLGFGNAGYKRGTLDGNWQFSRTGAFRLNLMGDDENKAGRGP
TEFKRYGVAPSVSLGLGTPDRVTLMYYHMQNDDLPDVGIPYDNPTFNARTDGAPRLMTAGNGAPVKVPFDTWYGLVNRDS
DQDSIDMGTLRLEHDFNSHLHIRNTTRYSETSQNDLWTMPDDSQGNIYYGYVYRRLNSRVSTFDTAINQTDFYGTVSLLG
FRNQFSTGMEFTREQGKNDTDTAYVNGVNVASGTNFTHCATALAFTSHTCTTLSNPNPNDMWTGDIRRTGNPNSTRMDTK
AVYLTDTVTFMPQLLGNFGVRLDNVQSTYRAQAGEYGRGDNLFTYQGGLVYKPARNGSIYASYATSAIPPGNSVGQGADD
ISLGADRTGNIGSVLKPERDRTIEVGTKWNVLHDRVTLTGALFQIDTTNFKIATASGGISNGGSKRTRGGEVGVSGHITR
DWSMTAGYSYLDARLVQAGGSGAAAGLMNGRRAPNTPENSLALWNTYDITPGFKVGSGVYYMGKVYGADSPTAPKYVPGY
WRFDIMASYRFLKHYTLQLNIQNLTNKRYFTQAYVTHYALQAAGRTAFVTLNAHF
>Mature_774_residues
STGNIASKKSGGTVSNLTLCGTTLLLGAQSVAHAADTLKRDEKKKKTHDPAIHQQGRPLPAHEEIDVVGQWQHRSPKFTA
PLLDTPKSVTIISRELLDQTASHTLVDALRNVPGITMGAGEGGNPVGDRPFLRGFDAQSSTFVDGLRDVGAQSRETFNVE
AVEVIKGDSGAISGRAGAGGSIVIDSKMPRLKNSLDASLGFGNAGYKRGTLDGNWQFSRTGAFRLNLMGDDENKAGRGPT
EFKRYGVAPSVSLGLGTPDRVTLMYYHMQNDDLPDVGIPYDNPTFNARTDGAPRLMTAGNGAPVKVPFDTWYGLVNRDSD
QDSIDMGTLRLEHDFNSHLHIRNTTRYSETSQNDLWTMPDDSQGNIYYGYVYRRLNSRVSTFDTAINQTDFYGTVSLLGF
RNQFSTGMEFTREQGKNDTDTAYVNGVNVASGTNFTHCATALAFTSHTCTTLSNPNPNDMWTGDIRRTGNPNSTRMDTKA
VYLTDTVTFMPQLLGNFGVRLDNVQSTYRAQAGEYGRGDNLFTYQGGLVYKPARNGSIYASYATSAIPPGNSVGQGADDI
SLGADRTGNIGSVLKPERDRTIEVGTKWNVLHDRVTLTGALFQIDTTNFKIATASGGISNGGSKRTRGGEVGVSGHITRD
WSMTAGYSYLDARLVQAGGSGAAAGLMNGRRAPNTPENSLALWNTYDITPGFKVGSGVYYMGKVYGADSPTAPKYVPGYW
RFDIMASYRFLKHYTLQLNIQNLTNKRYFTQAYVTHYALQAAGRTAFVTLNAHF

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=743, Percent_Identity=34.5895020188425, Blast_Score=345, Evalue=6e-96,
Organism=Escherichia coli, GI1786344, Length=736, Percent_Identity=22.0108695652174, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787344, Length=290, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 84189; Mature: 84057

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGNIASKKSGGTVSNLTLCGTTLLLGAQSVAHAADTLKRDEKKKKTHDPAIHQQGRPL
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
PAHEEIDVVGQWQHRSPKFTAPLLDTPKSVTIISRELLDQTASHTLVDALRNVPGITMGA
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GEGGNPVGDRPFLRGFDAQSSTFVDGLRDVGAQSRETFNVEAVEVIKGDSGAISGRAGAG
CCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCEECEEEEEEEECCCCCCCCCCCCC
GSIVIDSKMPRLKNSLDASLGFGNAGYKRGTLDGNWQFSRTGAFRLNLMGDDENKAGRGP
CEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCH
TEFKRYGVAPSVSLGLGTPDRVTLMYYHMQNDDLPDVGIPYDNPTFNARTDGAPRLMTAG
HHHHHHCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
NGAPVKVPFDTWYGLVNRDSDQDSIDMGTLRLEHDFNSHLHIRNTTRYSETSQNDLWTMP
CCCEEEEEHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEECC
DDSQGNIYYGYVYRRLNSRVSTFDTAINQTDFYGTVSLLGFRNQFSTGMEFTREQGKNDT
CCCCCCEEEEEEEEHHHCHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCC
DTAYVNGVNVASGTNFTHCATALAFTSHTCTTLSNPNPNDMWTGDIRRTGNPNSTRMDTK
CEEEEECEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEECCCCCCCEECCE
AVYLTDTVTFMPQLLGNFGVRLDNVQSTYRAQAGEYGRGDNLFTYQGGLVYKPARNGSIY
EEEEEHHHHHHHHHHHHCCCEECCHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCCEE
ASYATSAIPPGNSVGQGADDISLGADRTGNIGSVLKPERDRTIEVGTKWNVLHDRVTLTG
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECEEEEEE
ALFQIDTTNFKIATASGGISNGGSKRTRGGEVGVSGHITRDWSMTAGYSYLDARLVQAGG
EEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHEECCC
SGAAAGLMNGRRAPNTPENSLALWNTYDITPGFKVGSGVYYMGKVYGADSPTAPKYVPGY
CCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCCEECCCEEEEEEEECCCCCCCCCCCCCE
WRFDIMASYRFLKHYTLQLNIQNLTNKRYFTQAYVTHYALQAAGRTAFVTLNAHF
EEEHHHHHHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
>Mature Secondary Structure 
STGNIASKKSGGTVSNLTLCGTTLLLGAQSVAHAADTLKRDEKKKKTHDPAIHQQGRPL
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
PAHEEIDVVGQWQHRSPKFTAPLLDTPKSVTIISRELLDQTASHTLVDALRNVPGITMGA
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GEGGNPVGDRPFLRGFDAQSSTFVDGLRDVGAQSRETFNVEAVEVIKGDSGAISGRAGAG
CCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCEECEEEEEEEECCCCCCCCCCCCC
GSIVIDSKMPRLKNSLDASLGFGNAGYKRGTLDGNWQFSRTGAFRLNLMGDDENKAGRGP
CEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCCH
TEFKRYGVAPSVSLGLGTPDRVTLMYYHMQNDDLPDVGIPYDNPTFNARTDGAPRLMTAG
HHHHHHCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
NGAPVKVPFDTWYGLVNRDSDQDSIDMGTLRLEHDFNSHLHIRNTTRYSETSQNDLWTMP
CCCEEEEEHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEECC
DDSQGNIYYGYVYRRLNSRVSTFDTAINQTDFYGTVSLLGFRNQFSTGMEFTREQGKNDT
CCCCCCEEEEEEEEHHHCHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCC
DTAYVNGVNVASGTNFTHCATALAFTSHTCTTLSNPNPNDMWTGDIRRTGNPNSTRMDTK
CEEEEECEEECCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEECCCCCCCEECCE
AVYLTDTVTFMPQLLGNFGVRLDNVQSTYRAQAGEYGRGDNLFTYQGGLVYKPARNGSIY
EEEEEHHHHHHHHHHHHCCCEECCHHHHHHHCCCCCCCCCCEEEECCCEEECCCCCCCEE
ASYATSAIPPGNSVGQGADDISLGADRTGNIGSVLKPERDRTIEVGTKWNVLHDRVTLTG
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECEEEEEE
ALFQIDTTNFKIATASGGISNGGSKRTRGGEVGVSGHITRDWSMTAGYSYLDARLVQAGG
EEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHEECCC
SGAAAGLMNGRRAPNTPENSLALWNTYDITPGFKVGSGVYYMGKVYGADSPTAPKYVPGY
CCCCHHHCCCCCCCCCCCCCEEEEEEEECCCCCEECCCEEEEEEEECCCCCCCCCCCCCE
WRFDIMASYRFLKHYTLQLNIQNLTNKRYFTQAYVTHYALQAAGRTAFVTLNAHF
EEEHHHHHHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]