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The map label for this gene is ybiX [C]

Identifier: 162147033

GI number: 162147033

Start: 1232828

End: 1233511

Strand: Direct

Name: ybiX [C]

Synonym: GDI_1238

Alternate gene names: 162147033

Gene position: 1232828-1233511 (Clockwise)

Preceding gene: 162147032

Following gene: 162147034

Centisome position: 31.26

GC content: 64.62

Gene sequence:

>684_bases
ATGCTGATCCATATTCCCTCGGTCCTGACGGTGGAGGAGGTCGCGCATTGCCGCCAGATCATGGCCGGCGCGGAATGGGT
GGACGGCCGGGTCACGGCCGGCCCCCAGTCCGCCATGGTCAAGAACAACCTGCAGATCCCGCTTTCGTCCGATGCGCACA
GGGAAATGCGCGATATCGTCCTGCGCGCACTGGGCCGCAATCCGACCTACAACAGCGCGGCCCTGCCGCTGCGGGTCGTG
CCGCCGCTGTTCAACCGGTACGATGCCGGAATGTCGTTCGCGGCCCATGTCGACAACGCCATCCGCCCGATCCATGAAAC
CGGGGCGCGCGTTCGCACCGACCTGTCATCGACCCTGTTCCTGTCGGAACCCGATGAATATGACGGCGGCGAACTGGTGC
TGCACGAGCCCGGCAGCACGCAGGAGCTCAAGCTGCCCGCCGGGGACATGGTCCTCTATCCGACCACGGCCCTGCACAGC
GTCAACGAGGTGACGCGCGGTTCCCGCCTTGCCTCGTTCTTCTGGACGCAATCCATGATCGCGGATGAAGCGCGGCGCCG
GATCATGTTCGAACTGGACAGGACCATCATGGACCTGAGGACGCGCCTGCCCGATGACGACCTGGCGGTGCTGAACCTGA
CGAACTGCTACCACAACCTGATGAGGCAGTGGTGCGTGCTCTAG

Upstream 100 bases:

>100_bases
AACAGGCTCAATTATTCGAACCTGTTCAGCGACCGCGTGACGCCGTCGACCGGCCGGGCTTTCCTGTTCAACATCTCGGC
CACCTATTAAGGTTTTCACG

Downstream 100 bases:

>100_bases
CCCGCCTGCGCCGCCGTCAGCCCCGGTCCCAGCCCAGGGCGCCGCTCCCTGCCGAGATCGAGGCGATCCGGCAGCAGGCG
GAGAAAGGCCATACGCTGGA

Product: PKHD-type hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLIHIPSVLTVEEVAHCRQIMAGAEWVDGRVTAGPQSAMVKNNLQIPLSSDAHREMRDIVLRALGRNPTYNSAALPLRVV
PPLFNRYDAGMSFAAHVDNAIRPIHETGARVRTDLSSTLFLSEPDEYDGGELVLHEPGSTQELKLPAGDMVLYPTTALHS
VNEVTRGSRLASFFWTQSMIADEARRRIMFELDRTIMDLRTRLPDDDLAVLNLTNCYHNLMRQWCVL

Sequences:

>Translated_227_residues
MLIHIPSVLTVEEVAHCRQIMAGAEWVDGRVTAGPQSAMVKNNLQIPLSSDAHREMRDIVLRALGRNPTYNSAALPLRVV
PPLFNRYDAGMSFAAHVDNAIRPIHETGARVRTDLSSTLFLSEPDEYDGGELVLHEPGSTQELKLPAGDMVLYPTTALHS
VNEVTRGSRLASFFWTQSMIADEARRRIMFELDRTIMDLRTRLPDDDLAVLNLTNCYHNLMRQWCVL
>Mature_227_residues
MLIHIPSVLTVEEVAHCRQIMAGAEWVDGRVTAGPQSAMVKNNLQIPLSSDAHREMRDIVLRALGRNPTYNSAALPLRVV
PPLFNRYDAGMSFAAHVDNAIRPIHETGARVRTDLSSTLFLSEPDEYDGGELVLHEPGSTQELKLPAGDMVLYPTTALHS
VNEVTRGSRLASFFWTQSMIADEARRRIMFELDRTIMDLRTRLPDDDLAVLNLTNCYHNLMRQWCVL

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=48, Blast_Score=222, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1238_GLUDA (A9HE41)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001601494.1
- RefSeq:   YP_002276324.1
- ProteinModelPortal:   A9HE41
- SMR:   A9HE41
- GeneID:   5791990
- GeneID:   6975375
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_1949
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- ProtClustDB:   CLSK2402913
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25508; Mature: 25508

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 169-169

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIHIPSVLTVEEVAHCRQIMAGAEWVDGRVTAGPQSAMVKNNLQIPLSSDAHREMRDIV
CEEECCCHHHHHHHHHHHHHHHCCHHCCCEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH
LRALGRNPTYNSAALPLRVVPPLFNRYDAGMSFAAHVDNAIRPIHETGARVRTDLSSTLF
HHHHCCCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEE
LSEPDEYDGGELVLHEPGSTQELKLPAGDMVLYPTTALHSVNEVTRGSRLASFFWTQSMI
ECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
ADEARRRIMFELDRTIMDLRTRLPDDDLAVLNLTNCYHNLMRQWCVL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIHIPSVLTVEEVAHCRQIMAGAEWVDGRVTAGPQSAMVKNNLQIPLSSDAHREMRDIV
CEEECCCHHHHHHHHHHHHHHHCCHHCCCEECCCCHHHHHHCCCCCCCCCCHHHHHHHHH
LRALGRNPTYNSAALPLRVVPPLFNRYDAGMSFAAHVDNAIRPIHETGARVRTDLSSTLF
HHHHCCCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEE
LSEPDEYDGGELVLHEPGSTQELKLPAGDMVLYPTTALHSVNEVTRGSRLASFFWTQSMI
ECCCCCCCCCEEEEECCCCCCEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
ADEARRRIMFELDRTIMDLRTRLPDDDLAVLNLTNCYHNLMRQWCVL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA