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The map label for this gene is bfrD [H]

Identifier: 162147032

GI number: 162147032

Start: 1230370

End: 1232817

Strand: Direct

Name: bfrD [H]

Synonym: GDI_1237

Alternate gene names: 162147032

Gene position: 1230370-1232817 (Clockwise)

Preceding gene: 162147029

Following gene: 162147033

Centisome position: 31.19

GC content: 59.8

Gene sequence:

>2448_bases
ATGCCGCCTTCCCTGATCCGCCGTCGTATTTATCCCGCCCCGTTCATGGCGGGCCTGGCGCTGCTCTATTCCGGGATTCA
CGTCCATGCCGCCGACGCGGCAACCGACACCAAGACATCCAAGCCCAAGCATCATCGCCACGCCGCCGGCAAGGCGGCTG
CTGCGGGAAAGGCGGCGGCGCATAATCCGGCGAAGGCCGCCCCTGCCCCGGCCGTCGCCGCGACCGGCACGACGGCCGCC
CGGCCGCTCTATGCCCCGCCGGGGACGACAAGCACCATTACCCCGACGGAAGAAAACCTGACTGTCGTTGGCAGTCCGAT
GAACATCCTGCATCAGGATATCGGTCTCAGCCGCATGCCGCAGGATGTCATGCACACGCCGCAGACCGTCAATGTCGTGC
CGCAGGTGCTGATGGAACAGCAGAACGTGAAAACCCTCGACGAGGCGCTGAGAAACGTGCCCGGCATTACCGCATCGGTC
GGTGAGGGCGAAGGCGGGATGAGCGGCGACCAGTTCCTGATCCGCGGCTTCCAGGCGCAGAACGATATCTATGAAGATGG
CCTGCGCGACTATGGCGTCTATAGCCGCGACAGTTTCGATTATGACCATATTTCGGTCATCAAGGGACCGTCGTCCGAGG
TCTTCGGAAACGGCACCACCGGTGGCGCCATCAACATGGTCACCAAGATGCCCCATCTGGGGAACAGCTATAGCGGCCAG
TTTTCCGGCGGCTCGGCGGACTATTACCGCGGGACGCTGGACGTGAACCAGCAGATCGGCGAATCCACGGCCATCCGCAT
CGCCGGCATGGGCAATGAAAATGACGAGGTCGGGCGTGACGACGTCTATTCCCATCGCTGGGGTATCGCGCCGTCCATCG
CCTTCGGCCTGGGCAAGCCCACGACGCTGACGATTGAATATTTCCATCAGACCGATAACCGCATTCCCGATTACGGCGTG
CCGCTGCTGACCAAGCCCGGCACGACCATCGCCCGTCCGGCCACCGAATTCGGCGTGAATCGCAACAACTGGTACGGCAC
GCAGTACGACCAGGACGATTCGAACGTCGATATGCTGTCGGCGCATCTCAAGCACGAATTCAACAGCCATATCACCTTCT
ATGACGACCTGCGGGGGGGGATGTACCAGCGTTATTTCTCCGCGTCGTGGGAAGGGTGTAATGCCACGTGTAACGCGGCA
TATTTCGGAAACGATCCCGCCAGCGCGCTTGTCGATCGCCGTGGCCATCTGGGTGGTCCGGAACCCTACCAGCAGAACGA
CTGGTCGGTGCAGAACGTCGCGTCAGCGATTGCGAAATTCAATACCGGCATGCTGAAGCACCAGATCATCGCCGGGTGGG
ACGTGGCCCATGTCTATGACCGTCGTACGAATTACGCCTACAACTACAATGGCCTGAATGGAACGCAGACCGACACGACC
GGCCTCGTCAATCCGACCAATTTCGTGCCAGGACTCCTGCTTGGGAATGTCGGCCAATACAGCAGCAACCTTGTGAATAT
CAGCGGTGTCGGACGCGCGCTTCACAAAACCGGCGTTGCGACCGATGTCGGGGCTTTCTTCTCGGATCAGGTCTGGTTCG
CACCGTGGTTCTCGGCCCGCGCCGGTTTCCGCTGGGACCATTGGGACAGCCATTATTCCGCCAACGAGGGAATGGTCGGC
ACGGGCGTTTCCTACGGCCAGAACCAGGATACCTACAATCCGACCGTCAACCTGATGTACACGCCCAATGATGACACCAT
GGTCTATTTCAACTGGGCACAGTCGACCACACCTCTCGGCCTGTATGTCACCAACAGTTCCGAACCGCTCCGGGCGACGA
ATGAAGGATACGCGCCGGAACGCAGCAGCCTTTACGAAATCGGCGCGAAATACAATGCTTTCCACGGTCGTATGGGCTTT
ACCGTATCCGCCTTCAGGCTGGAAAAAGGCAATTCCCTTCTGACCGATCCGACCACCGGTGACGTCACGCCGTCGAGCGA
CCGCCAGCGGAACCAGGGATTCGAATTGAGCGCATCCGGCGAAATCCTGAAGAACTGGAACGTGATTGCGACCTACGCAT
ATTATGATGCGAAAACGATCGCGTCCGCCACGGCGGCGGATGTCGGCAAGCGCATTCAATATGCGCCGAAGAATTCGGCG
ACATTCTGGTCGACCTATACGATCGCACCGGCCACTCCATGGAACGTCACGTTCGGCGGCGGCCTGACCTGGCGGCAGAG
CGTCTGGCTCGACCCCGCCAATACGGCGAAGGTACCGGATACCGTTGAATGGGATGCGATGATTTCGCACAGCTTCCTCA
AGCATTGGAAAGTGGCCATGAACGGCTACAACCTTGCCAACAGGCTCAATTATTCGAACCTGTTCAGCGACCGCGTGACG
CCGTCGACCGGCCGGGCTTTCCTGTTCAACATCTCGGCCACCTATTAA

Upstream 100 bases:

>100_bases
ATACTTAAGGATACCCCACCCCGACACATTTTGCAATTGTGAGTAATTCGCATTTGTGGTTTTAACGAAGCCACCTATCC
GTGGTTGTGAGAACGACAGA

Downstream 100 bases:

>100_bases
GGTTTTCACGATGCTGATCCATATTCCCTCGGTCCTGACGGTGGAGGAGGTCGCGCATTGCCGCCAGATCATGGCCGGCG
CGGAATGGGTGGACGGCCGG

Product: tonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 815; Mature: 814

Protein sequence:

>815_residues
MPPSLIRRRIYPAPFMAGLALLYSGIHVHAADAATDTKTSKPKHHRHAAGKAAAAGKAAAHNPAKAAPAPAVAATGTTAA
RPLYAPPGTTSTITPTEENLTVVGSPMNILHQDIGLSRMPQDVMHTPQTVNVVPQVLMEQQNVKTLDEALRNVPGITASV
GEGEGGMSGDQFLIRGFQAQNDIYEDGLRDYGVYSRDSFDYDHISVIKGPSSEVFGNGTTGGAINMVTKMPHLGNSYSGQ
FSGGSADYYRGTLDVNQQIGESTAIRIAGMGNENDEVGRDDVYSHRWGIAPSIAFGLGKPTTLTIEYFHQTDNRIPDYGV
PLLTKPGTTIARPATEFGVNRNNWYGTQYDQDDSNVDMLSAHLKHEFNSHITFYDDLRGGMYQRYFSASWEGCNATCNAA
YFGNDPASALVDRRGHLGGPEPYQQNDWSVQNVASAIAKFNTGMLKHQIIAGWDVAHVYDRRTNYAYNYNGLNGTQTDTT
GLVNPTNFVPGLLLGNVGQYSSNLVNISGVGRALHKTGVATDVGAFFSDQVWFAPWFSARAGFRWDHWDSHYSANEGMVG
TGVSYGQNQDTYNPTVNLMYTPNDDTMVYFNWAQSTTPLGLYVTNSSEPLRATNEGYAPERSSLYEIGAKYNAFHGRMGF
TVSAFRLEKGNSLLTDPTTGDVTPSSDRQRNQGFELSASGEILKNWNVIATYAYYDAKTIASATAADVGKRIQYAPKNSA
TFWSTYTIAPATPWNVTFGGGLTWRQSVWLDPANTAKVPDTVEWDAMISHSFLKHWKVAMNGYNLANRLNYSNLFSDRVT
PSTGRAFLFNISATY

Sequences:

>Translated_815_residues
MPPSLIRRRIYPAPFMAGLALLYSGIHVHAADAATDTKTSKPKHHRHAAGKAAAAGKAAAHNPAKAAPAPAVAATGTTAA
RPLYAPPGTTSTITPTEENLTVVGSPMNILHQDIGLSRMPQDVMHTPQTVNVVPQVLMEQQNVKTLDEALRNVPGITASV
GEGEGGMSGDQFLIRGFQAQNDIYEDGLRDYGVYSRDSFDYDHISVIKGPSSEVFGNGTTGGAINMVTKMPHLGNSYSGQ
FSGGSADYYRGTLDVNQQIGESTAIRIAGMGNENDEVGRDDVYSHRWGIAPSIAFGLGKPTTLTIEYFHQTDNRIPDYGV
PLLTKPGTTIARPATEFGVNRNNWYGTQYDQDDSNVDMLSAHLKHEFNSHITFYDDLRGGMYQRYFSASWEGCNATCNAA
YFGNDPASALVDRRGHLGGPEPYQQNDWSVQNVASAIAKFNTGMLKHQIIAGWDVAHVYDRRTNYAYNYNGLNGTQTDTT
GLVNPTNFVPGLLLGNVGQYSSNLVNISGVGRALHKTGVATDVGAFFSDQVWFAPWFSARAGFRWDHWDSHYSANEGMVG
TGVSYGQNQDTYNPTVNLMYTPNDDTMVYFNWAQSTTPLGLYVTNSSEPLRATNEGYAPERSSLYEIGAKYNAFHGRMGF
TVSAFRLEKGNSLLTDPTTGDVTPSSDRQRNQGFELSASGEILKNWNVIATYAYYDAKTIASATAADVGKRIQYAPKNSA
TFWSTYTIAPATPWNVTFGGGLTWRQSVWLDPANTAKVPDTVEWDAMISHSFLKHWKVAMNGYNLANRLNYSNLFSDRVT
PSTGRAFLFNISATY
>Mature_814_residues
PPSLIRRRIYPAPFMAGLALLYSGIHVHAADAATDTKTSKPKHHRHAAGKAAAAGKAAAHNPAKAAPAPAVAATGTTAAR
PLYAPPGTTSTITPTEENLTVVGSPMNILHQDIGLSRMPQDVMHTPQTVNVVPQVLMEQQNVKTLDEALRNVPGITASVG
EGEGGMSGDQFLIRGFQAQNDIYEDGLRDYGVYSRDSFDYDHISVIKGPSSEVFGNGTTGGAINMVTKMPHLGNSYSGQF
SGGSADYYRGTLDVNQQIGESTAIRIAGMGNENDEVGRDDVYSHRWGIAPSIAFGLGKPTTLTIEYFHQTDNRIPDYGVP
LLTKPGTTIARPATEFGVNRNNWYGTQYDQDDSNVDMLSAHLKHEFNSHITFYDDLRGGMYQRYFSASWEGCNATCNAAY
FGNDPASALVDRRGHLGGPEPYQQNDWSVQNVASAIAKFNTGMLKHQIIAGWDVAHVYDRRTNYAYNYNGLNGTQTDTTG
LVNPTNFVPGLLLGNVGQYSSNLVNISGVGRALHKTGVATDVGAFFSDQVWFAPWFSARAGFRWDHWDSHYSANEGMVGT
GVSYGQNQDTYNPTVNLMYTPNDDTMVYFNWAQSTTPLGLYVTNSSEPLRATNEGYAPERSSLYEIGAKYNAFHGRMGFT
VSAFRLEKGNSLLTDPTTGDVTPSSDRQRNQGFELSASGEILKNWNVIATYAYYDAKTIASATAADVGKRIQYAPKNSAT
FWSTYTIAPATPWNVTFGGGLTWRQSVWLDPANTAKVPDTVEWDAMISHSFLKHWKVAMNGYNLANRLNYSNLFSDRVTP
STGRAFLFNISATY

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=731, Percent_Identity=28.4541723666211, Blast_Score=215, Evalue=9e-57,
Organism=Escherichia coli, GI1786344, Length=786, Percent_Identity=25.1908396946565, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI1787344, Length=282, Percent_Identity=27.3049645390071, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 88986; Mature: 88855

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPSLIRRRIYPAPFMAGLALLYSGIHVHAADAATDTKTSKPKHHRHAAGKAAAAGKAAA
CCHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCHHHCCCCCC
HNPAKAAPAPAVAATGTTAARPLYAPPGTTSTITPTEENLTVVGSPMNILHQDIGLSRMP
CCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCC
QDVMHTPQTVNVVPQVLMEQQNVKTLDEALRNVPGITASVGEGEGGMSGDQFLIRGFQAQ
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHEEEEHHHC
NDIYEDGLRDYGVYSRDSFDYDHISVIKGPSSEVFGNGTTGGAINMVTKMPHLGNSYSGQ
CHHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCC
FSGGSADYYRGTLDVNQQIGESTAIRIAGMGNENDEVGRDDVYSHRWGIAPSIAFGLGKP
CCCCCCHHEEEEEEHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCC
TTLTIEYFHQTDNRIPDYGVPLLTKPGTTIARPATEFGVNRNNWYGTQYDQDDSNVDMLS
EEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHH
AHLKHEFNSHITFYDDLRGGMYQRYFSASWEGCNATCNAAYFGNDPASALVDRRGHLGGP
HHHHHHHCCCEEEEHHHCCHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCC
EPYQQNDWSVQNVASAIAKFNTGMLKHQIIAGWDVAHVYDRRTNYAYNYNGLNGTQTDTT
CCCCCCCCCHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHCCCCEEEEECCCCCCCCCCC
GLVNPTNFVPGLLLGNVGQYSSNLVNISGVGRALHKTGVATDVGAFFSDQVWFAPWFSAR
CCCCCHHCCCHHHHCCCCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHCCCEEEEEHHHCC
AGFRWDHWDSHYSANEGMVGTGVSYGQNQDTYNPTVNLMYTPNDDTMVYFNWAQSTTPLG
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEE
LYVTNSSEPLRATNEGYAPERSSLYEIGAKYNAFHGRMGFTVSAFRLEKGNSLLTDPTTG
EEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCCEEECCCCCC
DVTPSSDRQRNQGFELSASGEILKNWNVIATYAYYDAKTIASATAADVGKRIQYAPKNSA
CCCCCCCCHHCCCEEEECCCCEEECCCEEEEEEEECHHHHHHHHHHHHHHHEEECCCCCC
TFWSTYTIAPATPWNVTFGGGLTWRQSVWLDPANTAKVPDTVEWDAMISHSFLKHWKVAM
EEEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
NGYNLANRLNYSNLFSDRVTPSTGRAFLFNISATY
CCCCHHHHCCHHHHHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
PPSLIRRRIYPAPFMAGLALLYSGIHVHAADAATDTKTSKPKHHRHAAGKAAAAGKAAA
CHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCHHHCCCCCC
HNPAKAAPAPAVAATGTTAARPLYAPPGTTSTITPTEENLTVVGSPMNILHQDIGLSRMP
CCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCC
QDVMHTPQTVNVVPQVLMEQQNVKTLDEALRNVPGITASVGEGEGGMSGDQFLIRGFQAQ
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHEEEEHHHC
NDIYEDGLRDYGVYSRDSFDYDHISVIKGPSSEVFGNGTTGGAINMVTKMPHLGNSYSGQ
CHHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCC
FSGGSADYYRGTLDVNQQIGESTAIRIAGMGNENDEVGRDDVYSHRWGIAPSIAFGLGKP
CCCCCCHHEEEEEEHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHCCCCC
TTLTIEYFHQTDNRIPDYGVPLLTKPGTTIARPATEFGVNRNNWYGTQYDQDDSNVDMLS
EEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHH
AHLKHEFNSHITFYDDLRGGMYQRYFSASWEGCNATCNAAYFGNDPASALVDRRGHLGGP
HHHHHHHCCCEEEEHHHCCHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCC
EPYQQNDWSVQNVASAIAKFNTGMLKHQIIAGWDVAHVYDRRTNYAYNYNGLNGTQTDTT
CCCCCCCCCHHHHHHHHHHHCCCHHHHHEECCCCHHHHHHCCCCEEEEECCCCCCCCCCC
GLVNPTNFVPGLLLGNVGQYSSNLVNISGVGRALHKTGVATDVGAFFSDQVWFAPWFSAR
CCCCCHHCCCHHHHCCCCCCCCCEEEEHHHHHHHHHCCCCHHHHHHHCCCEEEEEHHHCC
AGFRWDHWDSHYSANEGMVGTGVSYGQNQDTYNPTVNLMYTPNDDTMVYFNWAQSTTPLG
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEE
LYVTNSSEPLRATNEGYAPERSSLYEIGAKYNAFHGRMGFTVSAFRLEKGNSLLTDPTTG
EEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCCEEECCCCCC
DVTPSSDRQRNQGFELSASGEILKNWNVIATYAYYDAKTIASATAADVGKRIQYAPKNSA
CCCCCCCCHHCCCEEEECCCCEEECCCEEEEEEEECHHHHHHHHHHHHHHHEEECCCCCC
TFWSTYTIAPATPWNVTFGGGLTWRQSVWLDPANTAKVPDTVEWDAMISHSFLKHWKVAM
EEEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
NGYNLANRLNYSNLFSDRVTPSTGRAFLFNISATY
CCCCHHHHCCHHHHHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]