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The map label for this gene is nodV [H]

Identifier: 162147031

GI number: 162147031

Start: 1229066

End: 1230175

Strand: Reverse

Name: nodV [H]

Synonym: GDI_1236

Alternate gene names: 162147031

Gene position: 1230175-1229066 (Counterclockwise)

Preceding gene: 162147035

Following gene: 162147030

Centisome position: 31.19

GC content: 65.14

Gene sequence:

>1110_bases
TTGTTTCACCACATGAAACAGGAGGTTGCGGTCGAAAGAGAGGAAAGCGCGAGGCCGATGCGGGGCTGGTTGTGGTGCGC
GACGACGCTGATTGCCGTGCTGGTGTTCGGTATCACATTGTTTCCGTCCCATGACGCCTTCGGCGTTCTGTACGTGCTGG
TCATCGTGCTCGCCGCCGATCGCGCGACCATGCGGATGCTGCAGATGATCGGCGCGGCCTGCGTCGTGCTGGAATGCGCG
GCCTTCTCGATCGTCCATCATGGCGGCTCCTTCGACGGCGCCTATGCGCGGCTTGCCCTGAGCATCACCGCGACGATTGT
CGTGACGATCCTGACCATTCGCAATAAACGGGCCAGGGACGATCTGGCGCGCCACGCCCGGGCGCTGACGCATGCGGATC
GCATTGCCACGCTCGGGCATCTGGCGCTGTCGATCGCCCACGAGGTCAACCAGCCCCTGTCGGCGATGACGACCCTGGCC
TTCTCCGGCGGCCGATGGCTGGACCGGACACGTCCCGATCTCGACGAGGCCCTGTCCTGTTTCCGCCAGATCGAGGCCAA
CGGCAGGCGGGCCGCCGACATCGTCGGGCATGTGCGCGAACTGACCCGCAAGGCGCCGGTCGCGCGGTGCCCGCTGGACC
TGAGACGGATCGTCGAGGATACGATCGCCCTTCTCCAGTCCGAGACGACGGCGCGCCGGGTCGTGGTGCAGAAAATCTTT
CAAAACGACCTTCCCATGATCCACGCGGACAGGATCGAAATTCAGCAGGTAGTCGTGAATCTGATGATGAATGCGGTACA
GGCGCTGGAACCGGTGGCCGGACGGCGCAGGACGATCACCGTTTCCCTGCGGGCGGACAGATCCCGTCCCGGCGCCATCG
AAATGGAAATCCGGGATACCGGGCCCGGATTTTCCCAACCGGACCCGAATGCGCTGTTCGAGCCTTTCGTCACCACCAGG
CCGGACGGGATGGGAATGGGACTGGCGATCTGCCGGAACATCGTCCGGTCGCATGGCGGTGCGATCACGGCCGCAAACGG
CACGCCCTCCGGCGCCGTCATAACGGTCAGGCTGCCCGCCGCGCACGCCACGGCGGCGGCAGCGGCATGA

Upstream 100 bases:

>100_bases
AAGTATATGTTGCTGGTGGGTTAACGTTTTCTAATATGACCGTTTTAATTCACTATTTGGAACGGTCTTATCCAGGAACA
GAATAGGGGGCGCGACTGTC

Downstream 100 bases:

>100_bases
GCGGGCAGGCACCGGAAGACCGGCCCCGGCCGCATGTCGTCGTCGTCGATGACGATGCCGGGGTGCGCGCGTCGCTGGAC
AGCCTGTTCCGTTCCGCCGG

Product: histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MFHHMKQEVAVEREESARPMRGWLWCATTLIAVLVFGITLFPSHDAFGVLYVLVIVLAADRATMRMLQMIGAACVVLECA
AFSIVHHGGSFDGAYARLALSITATIVVTILTIRNKRARDDLARHARALTHADRIATLGHLALSIAHEVNQPLSAMTTLA
FSGGRWLDRTRPDLDEALSCFRQIEANGRRAADIVGHVRELTRKAPVARCPLDLRRIVEDTIALLQSETTARRVVVQKIF
QNDLPMIHADRIEIQQVVVNLMMNAVQALEPVAGRRRTITVSLRADRSRPGAIEMEIRDTGPGFSQPDPNALFEPFVTTR
PDGMGMGLAICRNIVRSHGGAITAANGTPSGAVITVRLPAAHATAAAAA

Sequences:

>Translated_369_residues
MFHHMKQEVAVEREESARPMRGWLWCATTLIAVLVFGITLFPSHDAFGVLYVLVIVLAADRATMRMLQMIGAACVVLECA
AFSIVHHGGSFDGAYARLALSITATIVVTILTIRNKRARDDLARHARALTHADRIATLGHLALSIAHEVNQPLSAMTTLA
FSGGRWLDRTRPDLDEALSCFRQIEANGRRAADIVGHVRELTRKAPVARCPLDLRRIVEDTIALLQSETTARRVVVQKIF
QNDLPMIHADRIEIQQVVVNLMMNAVQALEPVAGRRRTITVSLRADRSRPGAIEMEIRDTGPGFSQPDPNALFEPFVTTR
PDGMGMGLAICRNIVRSHGGAITAANGTPSGAVITVRLPAAHATAAAAA
>Mature_369_residues
MFHHMKQEVAVEREESARPMRGWLWCATTLIAVLVFGITLFPSHDAFGVLYVLVIVLAADRATMRMLQMIGAACVVLECA
AFSIVHHGGSFDGAYARLALSITATIVVTILTIRNKRARDDLARHARALTHADRIATLGHLALSIAHEVNQPLSAMTTLA
FSGGRWLDRTRPDLDEALSCFRQIEANGRRAADIVGHVRELTRKAPVARCPLDLRRIVEDTIALLQSETTARRVVVQKIF
QNDLPMIHADRIEIQQVVVNLMMNAVQALEPVAGRRRTITVSLRADRSRPGAIEMEIRDTGPGFSQPDPNALFEPFVTTR
PDGMGMGLAICRNIVRSHGGAITAANGTPSGAVITVRLPAAHATAAAAA

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=262, Percent_Identity=29.0076335877863, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1788549, Length=234, Percent_Identity=31.1965811965812, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790300, Length=236, Percent_Identity=28.8135593220339, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786912, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789149, Length=211, Percent_Identity=25.1184834123223, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 40144; Mature: 40144

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHHMKQEVAVEREESARPMRGWLWCATTLIAVLVFGITLFPSHDAFGVLYVLVIVLAAD
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
RATMRMLQMIGAACVVLECAAFSIVHHGGSFDGAYARLALSITATIVVTILTIRNKRARD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DLARHARALTHADRIATLGHLALSIAHEVNQPLSAMTTLAFSGGRWLDRTRPDLDEALSC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
FRQIEANGRRAADIVGHVRELTRKAPVARCPLDLRRIVEDTIALLQSETTARRVVVQKIF
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QNDLPMIHADRIEIQQVVVNLMMNAVQALEPVAGRRRTITVSLRADRSRPGAIEMEIRDT
HCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEECC
GPGFSQPDPNALFEPFVTTRPDGMGMGLAICRNIVRSHGGAITAANGTPSGAVITVRLPA
CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
AHATAAAAA
HHHHHHHCC
>Mature Secondary Structure
MFHHMKQEVAVEREESARPMRGWLWCATTLIAVLVFGITLFPSHDAFGVLYVLVIVLAAD
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
RATMRMLQMIGAACVVLECAAFSIVHHGGSFDGAYARLALSITATIVVTILTIRNKRARD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
DLARHARALTHADRIATLGHLALSIAHEVNQPLSAMTTLAFSGGRWLDRTRPDLDEALSC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
FRQIEANGRRAADIVGHVRELTRKAPVARCPLDLRRIVEDTIALLQSETTARRVVVQKIF
HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QNDLPMIHADRIEIQQVVVNLMMNAVQALEPVAGRRRTITVSLRADRSRPGAIEMEIRDT
HCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEECC
GPGFSQPDPNALFEPFVTTRPDGMGMGLAICRNIVRSHGGAITAANGTPSGAVITVRLPA
CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECC
AHATAAAAA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]