Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 162146932

GI number: 162146932

Start: 1129350

End: 1130759

Strand: Reverse

Name: radA [H]

Synonym: GDI_1137

Alternate gene names: 162146932

Gene position: 1130759-1129350 (Counterclockwise)

Preceding gene: 162146933

Following gene: 162146931

Centisome position: 28.67

GC content: 71.63

Gene sequence:

>1410_bases
GTGGCCCGCCGTCCCTCGCATCATTACGTCTGCCAGTCCTGCGGCGCGGTCTTTCCCAAATGGGCCGGACGGTGCGAGGC
CTGCGGGGCGTGGAACAGCATCGTCGAGGAAGCGGCGGCGCCCTCGGCGACCGGCGGGACGGCGCCCCGGCGCGCCCGGG
GGGCCGCGATCGACTTCGTCAGCCTGGACGGCGTGGCCGAGCCGCCGCCGCGTGTCGGCACCCGCATTGCCGAACTGGAC
CGCGTGCTGGGCGGCGGGCTGGTGCCGGCGTCGGTGGTGCTGGTGGGGGGCGATCCGGGCATCGGCAAATCGACGCTGCT
GCTGCAGGCGGCGTGCGCCCTGGCCAATGGCGGCCGGCGGGTGATGTATATCTCGGGCGAGGAAGCGGTGGACCAGATCC
GCCTGCGGGCGCGCCGGCTGGGGCTGGACGCGCCGGGGCTGCATGTGGCGGCGGCGATCAACGTGACCGACATCGCCGGC
ACGCTGGAGGCCGAGCGCGACGTGGCGCTGGTCATCATCGATTCGATCCAGACCATGTGGCTGGAAACGGTGGAAAGCGC
CCCCGGCACGGTCAGCCAGGTGCGCGCCACGGCGTTCGAACTGATCCGCCTGGCCAAGCAGCGCGGCTTCAGCCTGATCC
TGGTCGGCCATGTGACCAAGGAGGGCGCGCTGGCTGGTCCCCGCGTGCTGGAACACATGGTCGATGCCGTGATGTATTTC
GAAGGCGATCGCGGCCACCAGTTCCGCATCCTGCGTGCCGCCAAGAACCGGTTCGGCGCCACGGATGAAATCGGCGTCTT
CGCCATGACCGACCAGGGGCTGGTCGAGGTGCCGAATCCCTCCGCCCTGTTCCTGGCCGAACGGCGCGGGCATATCGCGG
GATCGGCGGTCTTCGCGGGGATCGAGGGCACGCGGCCGGTGCTGCTGGAAGTCCAGGCCCTGCTGTCGCCCAAATCCGGC
GATTCCGCGCCGCGCCGCGCGGTGGTGGGCTGGGATTCCTCGCGCCTGAACATGCTGCTGGCGGTGCTGGAGGCCCGGTG
CGGCATGAAGCTGCATGGCATGGACGTGCATCTGAACATCGCGGGCGGGCTGCGGGTGCTGGAACCGGGGGCCGACCTGG
CGGTGGCGGCGGCGCTGGTCTCGGCCGCCACCGGCCGGCCCACCCATGCCGGCGCCGTCTATTTCGGCGAGGTCGGGCTG
TCCGGCGAGGTCCGGCAGGTCGCCCAGGTCGATGCCCGGCTGAAGGAGGCGCAGAAGCTGGGCTTCGACGCCGCCTTCCT
GCCCCGGCGCATCGCGCGCGGCCATACCCGCCTGGTCGCGCCGGATGGGCTGCACCTGAATGAAATCGGCCATCTGGGGG
ATCTGGTGGCCCTGTTCGGCGGCGGGGACGCGGCCGACGACGGGTCATGA

Upstream 100 bases:

>100_bases
CCACGGCCGCCGCGAAGGCCCGATCAGCATGGAACTGCGCCGCTAGGCCGTACGCGCCCGGCAACAGGTCCTGAACGGCA
CGAAAACCGGAGTACCCTAC

Downstream 100 bases:

>100_bases
GCGGCAGCCGGGCCGACAGCCAGGCGGGGGGCCGCGTGATGCTGGAAGCCCCCGCCCGGCTGGAGAAGGAGGTCCGCAAG
AGCGTGTTCCTGGCCCAGGC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MARRPSHHYVCQSCGAVFPKWAGRCEACGAWNSIVEEAAAPSATGGTAPRRARGAAIDFVSLDGVAEPPPRVGTRIAELD
RVLGGGLVPASVVLVGGDPGIGKSTLLLQAACALANGGRRVMYISGEEAVDQIRLRARRLGLDAPGLHVAAAINVTDIAG
TLEAERDVALVIIDSIQTMWLETVESAPGTVSQVRATAFELIRLAKQRGFSLILVGHVTKEGALAGPRVLEHMVDAVMYF
EGDRGHQFRILRAAKNRFGATDEIGVFAMTDQGLVEVPNPSALFLAERRGHIAGSAVFAGIEGTRPVLLEVQALLSPKSG
DSAPRRAVVGWDSSRLNMLLAVLEARCGMKLHGMDVHLNIAGGLRVLEPGADLAVAAALVSAATGRPTHAGAVYFGEVGL
SGEVRQVAQVDARLKEAQKLGFDAAFLPRRIARGHTRLVAPDGLHLNEIGHLGDLVALFGGGDAADDGS

Sequences:

>Translated_469_residues
MARRPSHHYVCQSCGAVFPKWAGRCEACGAWNSIVEEAAAPSATGGTAPRRARGAAIDFVSLDGVAEPPPRVGTRIAELD
RVLGGGLVPASVVLVGGDPGIGKSTLLLQAACALANGGRRVMYISGEEAVDQIRLRARRLGLDAPGLHVAAAINVTDIAG
TLEAERDVALVIIDSIQTMWLETVESAPGTVSQVRATAFELIRLAKQRGFSLILVGHVTKEGALAGPRVLEHMVDAVMYF
EGDRGHQFRILRAAKNRFGATDEIGVFAMTDQGLVEVPNPSALFLAERRGHIAGSAVFAGIEGTRPVLLEVQALLSPKSG
DSAPRRAVVGWDSSRLNMLLAVLEARCGMKLHGMDVHLNIAGGLRVLEPGADLAVAAALVSAATGRPTHAGAVYFGEVGL
SGEVRQVAQVDARLKEAQKLGFDAAFLPRRIARGHTRLVAPDGLHLNEIGHLGDLVALFGGGDAADDGS
>Mature_468_residues
ARRPSHHYVCQSCGAVFPKWAGRCEACGAWNSIVEEAAAPSATGGTAPRRARGAAIDFVSLDGVAEPPPRVGTRIAELDR
VLGGGLVPASVVLVGGDPGIGKSTLLLQAACALANGGRRVMYISGEEAVDQIRLRARRLGLDAPGLHVAAAINVTDIAGT
LEAERDVALVIIDSIQTMWLETVESAPGTVSQVRATAFELIRLAKQRGFSLILVGHVTKEGALAGPRVLEHMVDAVMYFE
GDRGHQFRILRAAKNRFGATDEIGVFAMTDQGLVEVPNPSALFLAERRGHIAGSAVFAGIEGTRPVLLEVQALLSPKSGD
SAPRRAVVGWDSSRLNMLLAVLEARCGMKLHGMDVHLNIAGGLRVLEPGADLAVAAALVSAATGRPTHAGAVYFGEVGLS
GEVRQVAQVDARLKEAQKLGFDAAFLPRRIARGHTRLVAPDGLHLNEIGHLGDLVALFGGGDAADDGS

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=469, Percent_Identity=44.9893390191898, Blast_Score=379, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 49100; Mature: 48969

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRPSHHYVCQSCGAVFPKWAGRCEACGAWNSIVEEAAAPSATGGTAPRRARGAAIDFV
CCCCCCCHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
SLDGVAEPPPRVGTRIAELDRVLGGGLVPASVVLVGGDPGIGKSTLLLQAACALANGGRR
EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
VMYISGEEAVDQIRLRARRLGLDAPGLHVAAAINVTDIAGTLEAERDVALVIIDSIQTMW
EEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHCCCCCCCEEEEEEHHHHHHH
LETVESAPGTVSQVRATAFELIRLAKQRGFSLILVGHVTKEGALAGPRVLEHMVDAVMYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHEE
EGDRGHQFRILRAAKNRFGATDEIGVFAMTDQGLVEVPNPSALFLAERRGHIAGSAVFAG
ECCCCCEEEEEEHHHHHCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCCCCCCEEEC
IEGTRPVLLEVQALLSPKSGDSAPRRAVVGWDSSRLNMLLAVLEARCGMKLHGMDVHLNI
CCCCCHHHEEHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEECEEEEEEE
AGGLRVLEPGADLAVAAALVSAATGRPTHAGAVYFGEVGLSGEVRQVAQVDARLKEAQKL
CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
GFDAAFLPRRIARGHTRLVAPDGLHLNEIGHLGDLVALFGGGDAADDGS
CCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCC
>Mature Secondary Structure 
ARRPSHHYVCQSCGAVFPKWAGRCEACGAWNSIVEEAAAPSATGGTAPRRARGAAIDFV
CCCCCCHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
SLDGVAEPPPRVGTRIAELDRVLGGGLVPASVVLVGGDPGIGKSTLLLQAACALANGGRR
EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
VMYISGEEAVDQIRLRARRLGLDAPGLHVAAAINVTDIAGTLEAERDVALVIIDSIQTMW
EEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHCCCCCCCEEEEEEHHHHHHH
LETVESAPGTVSQVRATAFELIRLAKQRGFSLILVGHVTKEGALAGPRVLEHMVDAVMYF
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHEE
EGDRGHQFRILRAAKNRFGATDEIGVFAMTDQGLVEVPNPSALFLAERRGHIAGSAVFAG
ECCCCCEEEEEEHHHHHCCCCCCCEEEEECCCCEEECCCCCEEEEECCCCCCCCCCEEEC
IEGTRPVLLEVQALLSPKSGDSAPRRAVVGWDSSRLNMLLAVLEARCGMKLHGMDVHLNI
CCCCCHHHEEHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEECEEEEEEE
AGGLRVLEPGADLAVAAALVSAATGRPTHAGAVYFGEVGLSGEVRQVAQVDARLKEAQKL
CCCEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
GFDAAFLPRRIARGHTRLVAPDGLHLNEIGHLGDLVALFGGGDAADDGS
CCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA