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The map label for this gene is hupA [C]

Identifier: 162146745

GI number: 162146745

Start: 940759

End: 941028

Strand: Direct

Name: hupA [C]

Synonym: GDI_0923

Alternate gene names: 162146745

Gene position: 940759-941028 (Clockwise)

Preceding gene: 162146744

Following gene: 162146750

Centisome position: 23.85

GC content: 62.96

Gene sequence:

>270_bases
ATGAGCAAAGCCTTCATCGCCGCGGTTATCCAGGATTCGATCGATTGCACCGGCGTTGCCGCCAACCAGGCCGCCTCTGA
CCTGATCGCCGCCATCGTCCGCGAAATGAAGAAGGAAGGCGGCTTTACCCTGCCGTCGTTCGGGACGTTCACGGTCAAGA
AGACCAAGGCCCGCAAGGCGCTCAACCCCCGCACCGGCGAGCCGGTGAAGGTCAAGGCCGGCAAGACGGTGCGCTTCAAG
GCCAGCCCGAACCTGAAGAAGGCGGTCTGA

Upstream 100 bases:

>100_bases
TAACCGCGCGCTAAAAGCCGCGACCGCTGAGGCACGATGTCGTGACGGACCGGCCCGCCACGATTTTTTTCCCATGTCCG
GACAGGAGTGAACAGAGCCC

Downstream 100 bases:

>100_bases
CGTCATTCCACCCGCGGCCCGTCACCTGGCCGCGGGTGCTGCCCGCAGGGGCGGGTCGAAAAACGCAGTCTGTATCGGAA
GGACTCCTCGCCGGGGCGTC

Product: DNA-binding protein HU-alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFK
ASPNLKKAV

Sequences:

>Translated_89_residues
MSKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFK
ASPNLKKAV
>Mature_88_residues
SKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFKA
SPNLKKAV

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9422; Mature: 9291

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKA
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHC
LNPRTGEPVKVKAGKTVRFKASPNLKKAV
CCCCCCCCEEEECCCEEEEECCCCCCCCC
>Mature Secondary Structure 
SKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKA
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHC
LNPRTGEPVKVKAGKTVRFKASPNLKKAV
CCCCCCCCEEEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA