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The map label for this gene is atpD

Identifier: 162146520

GI number: 162146520

Start: 707517

End: 708998

Strand: Direct

Name: atpD

Synonym: GDI_0696

Alternate gene names: 162146520

Gene position: 707517-708998 (Clockwise)

Preceding gene: 162146519

Following gene: 162146521

Centisome position: 17.94

GC content: 66.26

Gene sequence:

>1482_bases
ATGTCGGAAACCACACAGAACGAGGCTCCTGTCGCAGCGCAGGGCGCCTCGCAGCACAGCAACATCGTCGGGCGCGTGAC
GCAGGTGCGCGGCGCCGTCGTCGACGTGCAGTTCGAGGGCACGCTGCCGCACATCCTCGATGCACTGCACGTGACCTTCA
ACGGCCAGACCGTGGTGCTGGAAGTCGCCCAGGAAATCGGCGAGCATGAAGTACGCTGCATCGCCATGGACACGACCGAC
GGCCTGATGCGCGGGACCGAAGTCGTGGCGACCGGCGGCCAGATCACGGTTCCCGTCGGCCCCGGCACGCTGGGCCGCAT
CCTGAACGTGATCGGCGAGCCGATCGACGAGCGCGGCCCGGTGAAGTCCGACAAGCGCTATCCGATCCATCGCAAGGCCC
CGTCCTTCGACGAGCAGGCCGCCGCGACCGAGATCCTGGTCACGGGCATCAAGGTCGTCGACCTGCTGTGCCCGTACCTG
AAGGGCGGCAAGGTCGGCCTGTTCGGCGGCGCCGGCGTGGGCAAGACCGTCATCATCCAGGAACTGATCAACAACATCGC
CAAGGCCCATGGCGGCGTGTCGGTGTTCGCGGGCGTCGGCGAGCGCACGCGCGAAGGCAACGACCTGTATTACGAAATGC
AGGATGCCGGCGTGATCAAGCTGGGCGAGGACACGACCGAGGGCTCGAAGGTGGCGCTGGTCTACGGCCAGATGAACGAG
CCGCCGGGCGCGCGTGCGCGCATCGCGCTGTCGGGCCTGTCCCTGGCCGAGTATTTCCGTGACGAGGAAGGCCAGGACGT
TCTGTTCTTCGTCGATAACATCTTCCGCTTCACGCAGGCGGGCGCCGAGGTCTCGGCCCTGCTGGGCCGTATCCCCTCCG
CCGTGGGCTACCAGCCGACGCTGGCGACCGAAATGGGCGCGCTGCAGGAGCGTATCACCTCGACGAAGAAGGGATCGATC
ACCTCGGTGCAGGCCGTCTACGTTCCGGCCGACGATCTGACCGACCCGGCGCCGGCCGCGACCTTCGCCCATCTGGACGC
GACGACGGTGCTGAACCGCTCGATCGCGGAAATGGGCATCTACCCCGCCGTCGATCCGCTGGATTCCACCTCGCGCTCGC
TGGACCCCAAGATCGTGGGCGAGGAGCATTACCAGGTGGCCCGCGACGTGCAGCGTATCCTGCAGACCTACAAGTCGCTG
CAGGACATCATCGCGATCCTGGGCATGGACGAACTGTCCGAGGACGACAAGCAGGTGGTGGCGCGTGCCCGCCGCATCCA
GCGCTTCCTGTCGCAGCCCTTCCACGTGGCCGAAGTCTTCACCGGCGCGCCGGGCAAGCTGGTGTCGCTGGAAGACACGG
TGCGTTCGTTCAAGGCGATCGTGGCCGGCGAATACGACCATCTGCCGGAAGGCGCGTTCTACATGGTCGGATCGATCGAG
GAAGCGGTGGCCAAGGCCGAGAAGATGAAGGAAACGGCCTGA

Upstream 100 bases:

>100_bases
GTACCCGCCAGACCAACATCACCAACGAACTGATCGAGATCATTTCGGGCGCCCAGGCCGTCTGAATTTGATCCGGTCCC
CTCGTCGCAGGAGCTGACCC

Downstream 100 bases:

>100_bases
CCGGCCCGATCCCGCGCAAGGAAGTCAGTTGATGCCGATTAAGGTCGAGATCGTCAGCCCCGAGAAGGTCCTCTTCTCGC
GCGCGGTCGACATGGCGCTG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSETTQNEAPVAAQGASQHSNIVGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVLEVAQEIGEHEVRCIAMDTTD
GLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYL
KGGKVGLFGGAGVGKTVIIQELINNIAKAHGGVSVFAGVGERTREGNDLYYEMQDAGVIKLGEDTTEGSKVALVYGQMNE
PPGARARIALSGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGALQERITSTKKGSI
TSVQAVYVPADDLTDPAPAATFAHLDATTVLNRSIAEMGIYPAVDPLDSTSRSLDPKIVGEEHYQVARDVQRILQTYKSL
QDIIAILGMDELSEDDKQVVARARRIQRFLSQPFHVAEVFTGAPGKLVSLEDTVRSFKAIVAGEYDHLPEGAFYMVGSIE
EAVAKAEKMKETA

Sequences:

>Translated_493_residues
MSETTQNEAPVAAQGASQHSNIVGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVLEVAQEIGEHEVRCIAMDTTD
GLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYL
KGGKVGLFGGAGVGKTVIIQELINNIAKAHGGVSVFAGVGERTREGNDLYYEMQDAGVIKLGEDTTEGSKVALVYGQMNE
PPGARARIALSGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGALQERITSTKKGSI
TSVQAVYVPADDLTDPAPAATFAHLDATTVLNRSIAEMGIYPAVDPLDSTSRSLDPKIVGEEHYQVARDVQRILQTYKSL
QDIIAILGMDELSEDDKQVVARARRIQRFLSQPFHVAEVFTGAPGKLVSLEDTVRSFKAIVAGEYDHLPEGAFYMVGSIE
EAVAKAEKMKETA
>Mature_492_residues
SETTQNEAPVAAQGASQHSNIVGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVLEVAQEIGEHEVRCIAMDTTDG
LMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLK
GGKVGLFGGAGVGKTVIIQELINNIAKAHGGVSVFAGVGERTREGNDLYYEMQDAGVIKLGEDTTEGSKVALVYGQMNEP
PGARARIALSGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGALQERITSTKKGSIT
SVQAVYVPADDLTDPAPAATFAHLDATTVLNRSIAEMGIYPAVDPLDSTSRSLDPKIVGEEHYQVARDVQRILQTYKSLQ
DIIAILGMDELSEDDKQVVARARRIQRFLSQPFHVAEVFTGAPGKLVSLEDTVRSFKAIVAGEYDHLPEGAFYMVGSIEE
AVAKAEKMKETA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=468, Percent_Identity=75.2136752136752, Blast_Score=714, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=29.595015576324, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI19913428, Length=425, Percent_Identity=25.1764705882353, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI50345984, Length=393, Percent_Identity=26.4631043256997, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI4757810, Length=393, Percent_Identity=26.4631043256997, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI19913426, Length=378, Percent_Identity=24.6031746031746, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=68.5224839400428, Blast_Score=640, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=382, Percent_Identity=29.3193717277487, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1790172, Length=438, Percent_Identity=23.7442922374429, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI25144756, Length=470, Percent_Identity=71.4893617021277, Blast_Score=688, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=30.1242236024845, Blast_Score=125, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=387, Percent_Identity=24.5478036175711, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=389, Percent_Identity=26.4781491002571, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=389, Percent_Identity=26.4781491002571, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17570191, Length=368, Percent_Identity=23.9130434782609, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=357, Percent_Identity=25.4901960784314, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=470, Percent_Identity=74.468085106383, Blast_Score=696, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319370, Length=401, Percent_Identity=26.1845386533666, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319603, Length=374, Percent_Identity=24.331550802139, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=251, Percent_Identity=26.6932270916335, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24638766, Length=500, Percent_Identity=70.6, Blast_Score=704, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=467, Percent_Identity=68.5224839400428, Blast_Score=643, Evalue=0.0,
Organism=Drosophila melanogaster, GI20129479, Length=322, Percent_Identity=28.8819875776398, Blast_Score=123, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24583988, Length=319, Percent_Identity=29.7805642633229, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24583986, Length=319, Percent_Identity=29.7805642633229, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24583984, Length=319, Percent_Identity=29.7805642633229, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24583992, Length=319, Percent_Identity=29.4670846394984, Blast_Score=119, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24638768, Length=120, Percent_Identity=47.5, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI281361666, Length=372, Percent_Identity=23.3870967741935, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24646341, Length=372, Percent_Identity=23.3870967741935, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17136796, Length=372, Percent_Identity=23.3870967741935, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24658560, Length=393, Percent_Identity=24.6819338422392, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_GLUDA (A9H9A8)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001600979.1
- RefSeq:   YP_002275710.1
- ProteinModelPortal:   A9H9A8
- SMR:   A9H9A8
- GeneID:   5789674
- GeneID:   6974718
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_1313
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 52875; Mature: 52743

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETTQNEAPVAAQGASQHSNIVGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVL
CCCCCCCCCCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHEEEECCCEEHH
EVAQEIGEHEVRCIAMDTTDGLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGP
HHHHHHCCCCEEEEEEECCCHHHCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCCC
VKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLKGGKVGLFGGAGVGKTVIIQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
ELINNIAKAHGGVSVFAGVGERTREGNDLYYEMQDAGVIKLGEDTTEGSKVALVYGQMNE
HHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEEEEEEECCCC
PPGARARIALSGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPT
CCCCCEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCH
LATEMGALQERITSTKKGSITSVQAVYVPADDLTDPAPAATFAHLDATTVLNRSIAEMGI
HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
YPAVDPLDSTSRSLDPKIVGEEHYQVARDVQRILQTYKSLQDIIAILGMDELSEDDKQVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHH
ARARRIQRFLSQPFHVAEVFTGAPGKLVSLEDTVRSFKAIVAGEYDHLPEGAFYMVGSIE
HHHHHHHHHHCCCCEEHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCEEEECCHH
EAVAKAEKMKETA
HHHHHHHHHHCCC
>Mature Secondary Structure 
SETTQNEAPVAAQGASQHSNIVGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVL
CCCCCCCCCCEECCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHEEEECCCEEHH
EVAQEIGEHEVRCIAMDTTDGLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGP
HHHHHHCCCCEEEEEEECCCHHHCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCCC
VKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLKGGKVGLFGGAGVGKTVIIQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
ELINNIAKAHGGVSVFAGVGERTREGNDLYYEMQDAGVIKLGEDTTEGSKVALVYGQMNE
HHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEEEEEEECCCC
PPGARARIALSGLSLAEYFRDEEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPT
CCCCCEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCH
LATEMGALQERITSTKKGSITSVQAVYVPADDLTDPAPAATFAHLDATTVLNRSIAEMGI
HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
YPAVDPLDSTSRSLDPKIVGEEHYQVARDVQRILQTYKSLQDIIAILGMDELSEDDKQVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHH
ARARRIQRFLSQPFHVAEVFTGAPGKLVSLEDTVRSFKAIVAGEYDHLPEGAFYMVGSIE
HHHHHHHHHHCCCCEEHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCEEEECCHH
EAVAKAEKMKETA
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA