Click here to switch to the map view.

The map label for this gene is atpC

Identifier: 162146521

GI number: 162146521

Start: 709027

End: 709452

Strand: Direct

Name: atpC

Synonym: GDI_0697

Alternate gene names: 162146521

Gene position: 709027-709452 (Clockwise)

Preceding gene: 162146520

Following gene: 162146523

Centisome position: 17.98

GC content: 67.37

Gene sequence:

>426_bases
TTGATGCCGATTAAGGTCGAGATCGTCAGCCCCGAGAAGGTCCTCTTCTCGCGCGCGGTCGACATGGCGCTGATCCCGGG
CCTGGAGGGCGATATCGCCGCCATGCCCGACCATGCGCCGATGATGCTGCTGCTGCGCGGTGGTGTCGTCGAACTGCATC
AGGACGGGGCGGTGACGGACCGGTTCTTCGTGGCCGGCGGCTTCGCCGACATGACGGAGACAAGCTGCACCATCCTGGCC
GACCAGGCGACCGCGCTGTCCGACCTGTCGGTCGAGGCGGCCCAGGCCCGTCTGGCGGAACTGGAAGCCTCGTACGACAA
GGCCGACAAGATGAACGTGCCGGTGCTGGACCTGCTGATGGCCAAGATGCAGTCGGCCCGCGCGGAAATCGAAGCGGCGG
GCGGCCCAGCGGTCCAGGGCGCGTAA

Upstream 100 bases:

>100_bases
GGCGCGTTCTACATGGTCGGATCGATCGAGGAAGCGGTGGCCAAGGCCGAGAAGATGAAGGAAACGGCCTGACCGGCCCG
ATCCCGCGCAAGGAAGTCAG

Downstream 100 bases:

>100_bases
CCGCCCCCGTTTGACGCAAGACGATGGCAGCACCCTTCGGGGTGCTGTTTTCGTTTGGGGTTCGTAGAGGCCGCTTCAAA
AATCCTTCAGCCCCGCCCGC

Product: ATP synthase epsilon chain

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MMPIKVEIVSPEKVLFSRAVDMALIPGLEGDIAAMPDHAPMMLLLRGGVVELHQDGAVTDRFFVAGGFADMTETSCTILA
DQATALSDLSVEAAQARLAELEASYDKADKMNVPVLDLLMAKMQSARAEIEAAGGPAVQGA

Sequences:

>Translated_141_residues
MMPIKVEIVSPEKVLFSRAVDMALIPGLEGDIAAMPDHAPMMLLLRGGVVELHQDGAVTDRFFVAGGFADMTETSCTILA
DQATALSDLSVEAAQARLAELEASYDKADKMNVPVLDLLMAKMQSARAEIEAAGGPAVQGA
>Mature_141_residues
MMPIKVEIVSPEKVLFSRAVDMALIPGLEGDIAAMPDHAPMMLLLRGGVVELHQDGAVTDRFFVAGGFADMTETSCTILA
DQATALSDLSVEAAQARLAELEASYDKADKMNVPVLDLLMAKMQSARAEIEAAGGPAVQGA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_GLUDA (A9H9B1)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001600980.1
- RefSeq:   YP_002275709.1
- ProteinModelPortal:   A9H9B1
- SMR:   A9H9B1
- GeneID:   5789675
- GeneID:   6974717
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_1312
- HOGENOM:   HBG663981
- OMA:   YKSIQHQ
- ProtClustDB:   CLSK958166
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 14830; Mature: 14830

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPIKVEIVSPEKVLFSRAVDMALIPGLEGDIAAMPDHAPMMLLLRGGVVELHQDGAVTD
CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEECCEEEEECCCCCCC
RFFVAGGFADMTETSCTILADQATALSDLSVEAAQARLAELEASYDKADKMNVPVLDLLM
EEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
AKMQSARAEIEAAGGPAVQGA
HHHHHHHHHEECCCCCCCCCC
>Mature Secondary Structure
MMPIKVEIVSPEKVLFSRAVDMALIPGLEGDIAAMPDHAPMMLLLRGGVVELHQDGAVTD
CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEECCEEEEECCCCCCC
RFFVAGGFADMTETSCTILADQATALSDLSVEAAQARLAELEASYDKADKMNVPVLDLLM
EEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
AKMQSARAEIEAAGGPAVQGA
HHHHHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA