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The map label for this gene is rpmJ

Identifier: 162146404

GI number: 162146404

Start: 586412

End: 586537

Strand: Direct

Name: rpmJ

Synonym: GDI_0579

Alternate gene names: 162146404

Gene position: 586412-586537 (Clockwise)

Preceding gene: 162146403

Following gene: 162146405

Centisome position: 14.87

GC content: 55.56

Gene sequence:

>126_bases
ATGAAGATCAGAAACAGCCTGAAGTCGGCCAAGGTTCGTGACAAGGACTGCCGTGTGGTCCGTCGTCATGGCAAGGTCTA
TGTCATCAACAAGAAGAACCCGCGCATGAAGGCCCGCCAGGGCTGA

Upstream 100 bases:

>100_bases
GAAAGTCAGGCATGGGGCGGGGGTGTGCGGTTGACTCCGTGCCGTGGGACCGGTATTCGGCCCGTCTTTGCGGTTTCCTG
CCGCCAGTGAGGGTCGGGTC

Downstream 100 bases:

>100_bases
TTGTCCGGGCGGCCTTGGCCGTACGGTTCATCTTGTGTGATTCGCGCACCCGCGTTCGGGTCCGGCTGTCCGGTCCCGGA
TGCGGGTGTTTGCGCATGGG

Product: 50S ribosomal protein L36

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 41; Mature: 41

Protein sequence:

>41_residues
MKIRNSLKSAKVRDKDCRVVRRHGKVYVINKKNPRMKARQG

Sequences:

>Translated_41_residues
MKIRNSLKSAKVRDKDCRVVRRHGKVYVINKKNPRMKARQG
>Mature_41_residues
MKIRNSLKSAKVRDKDCRVVRRHGKVYVINKKNPRMKARQG

Specific function: Unknown

COG id: COG0257

COG function: function code J; Ribosomal protein L36

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L36P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL36_GLUDA (A9H8E4)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001600863.1
- RefSeq:   YP_002275816.1
- ProteinModelPortal:   A9H8E4
- SMR:   A9H8E4
- GeneID:   5792087
- GeneID:   6974829
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_1421
- HOGENOM:   HBG734088
- ProtClustDB:   PRK00831
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00251
- InterPro:   IPR000473
- PANTHER:   PTHR18804
- TIGRFAMs:   TIGR01022

Pfam domain/function: PF00444 Ribosomal_L36; SSF57840 Ribosomal_L36

EC number: NA

Molecular weight: Translated: 4866; Mature: 4866

Theoretical pI: Translated: 12.19; Mature: 12.19

Prosite motif: PS00828 RIBOSOMAL_L36

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRNSLKSAKVRDKDCRVVRRHGKVYVINKKNPRMKARQG
CCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKIRNSLKSAKVRDKDCRVVRRHGKVYVINKKNPRMKARQG
CCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA