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The map label for this gene is ybfF [C]

Identifier: 162146347

GI number: 162146347

Start: 515770

End: 516561

Strand: Reverse

Name: ybfF [C]

Synonym: GDI_0522

Alternate gene names: 162146347

Gene position: 516561-515770 (Counterclockwise)

Preceding gene: 162146348

Following gene: 162146345

Centisome position: 13.1

GC content: 67.68

Gene sequence:

>792_bases
GTGCTGCTGAACGTCATCGCGCGCGGGCCCGAGGACCAGTCGGGGGGCGAGTCCGCGCGGCCGCCCATCGTCCTGCTGCA
CGGCCTGTTCGGGCGCGCGCGCAACCTGGGCTTCTTCCAGCGGCGGCTGGCCCGGACGCGGCGGACGCTGGCCATCGACC
TGCGCAACCACGGCGACAGCCCGCACGGCCCGATGGACTACAACACCATGGCCGACGACCTGCTGGATACGCTGGCCCAC
CACGCGGCGCTGCCCGCGACCCTGGTGGGCCATTCGATGGGGGGCAAGGTCGCGATGACGCTGGCCCTGACCCGGCCGGG
CATGGTCCACAGCCTGCTGGTGGCCGATATTCCGCCGGCCCGTACCGGGCACGGCCAGTTCTCGCTGGGCGAGCAGATGC
TGCGGGTGAAGTTCCCGCCCTACCTGAACCTGGCCGAGGCCGACGCCCTGCTGCGCCCCGAAATCCCCAATGCCGACGTG
CGGGCGCTGATGCTGCAGAATATCCGGCTGGGCGAGAATCCGGGCTGGATCATCGGGCTGCGCGACATCGTGTCGTCGAT
GACCAACATCGAAAGCTGGCCCTACATCCCCGAGGGCTATACCTATCCCGGACCGACCCTGTTCCTGGCCGGCGGCAATT
CACCCTATATCCGTCGGGAACATTTCGGGGTGATGCGCCGGCTGTTTCCCAATTACTGGCTGGAACGGATCGAAGAGGCC
GGCCACTGGCTGCATGTCGAAAACCCGACCCGCTTCGCCGCGCTGCTGGAAGCCTTCACCGAACAATATTGA

Upstream 100 bases:

>100_bases
CGCGCGTCGCCGAAGCCCATAAGCTCATGGAATCGGGTGCCCATTCGGGCAAGATCGTCCTGAGCCTGGTGCCGGCATAA
AAGGGAAGGACCATGCCATC

Downstream 100 bases:

>100_bases
CGCTACGCGGTCATGGGGTTGGCGCGGTCCGGCGGCTTCACCGCATCCGCCGCGCGCCACAGATACCACGCCGCCGCCGA
CCGATAGGGGCTCCAGTCCG

Product: lipase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLLNVIARGPEDQSGGESARPPIVLLHGLFGRARNLGFFQRRLARTRRTLAIDLRNHGDSPHGPMDYNTMADDLLDTLAH
HAALPATLVGHSMGGKVAMTLALTRPGMVHSLLVADIPPARTGHGQFSLGEQMLRVKFPPYLNLAEADALLRPEIPNADV
RALMLQNIRLGENPGWIIGLRDIVSSMTNIESWPYIPEGYTYPGPTLFLAGGNSPYIRREHFGVMRRLFPNYWLERIEEA
GHWLHVENPTRFAALLEAFTEQY

Sequences:

>Translated_263_residues
MLLNVIARGPEDQSGGESARPPIVLLHGLFGRARNLGFFQRRLARTRRTLAIDLRNHGDSPHGPMDYNTMADDLLDTLAH
HAALPATLVGHSMGGKVAMTLALTRPGMVHSLLVADIPPARTGHGQFSLGEQMLRVKFPPYLNLAEADALLRPEIPNADV
RALMLQNIRLGENPGWIIGLRDIVSSMTNIESWPYIPEGYTYPGPTLFLAGGNSPYIRREHFGVMRRLFPNYWLERIEEA
GHWLHVENPTRFAALLEAFTEQY
>Mature_263_residues
MLLNVIARGPEDQSGGESARPPIVLLHGLFGRARNLGFFQRRLARTRRTLAIDLRNHGDSPHGPMDYNTMADDLLDTLAH
HAALPATLVGHSMGGKVAMTLALTRPGMVHSLLVADIPPARTGHGQFSLGEQMLRVKFPPYLNLAEADALLRPEIPNADV
RALMLQNIRLGENPGWIIGLRDIVSSMTNIESWPYIPEGYTYPGPTLFLAGGNSPYIRREHFGVMRRLFPNYWLERIEEA
GHWLHVENPTRFAALLEAFTEQY

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI23200012, Length=254, Percent_Identity=38.5826771653543, Blast_Score=159, Evalue=3e-39,
Organism=Homo sapiens, GI23200008, Length=254, Percent_Identity=38.5826771653543, Blast_Score=159, Evalue=3e-39,
Organism=Homo sapiens, GI223941839, Length=247, Percent_Identity=34.412955465587, Blast_Score=129, Evalue=2e-30,
Organism=Escherichia coli, GI1786902, Length=251, Percent_Identity=33.0677290836653, Blast_Score=123, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17508535, Length=253, Percent_Identity=32.4110671936759, Blast_Score=115, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6321468, Length=285, Percent_Identity=27.719298245614, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6321452, Length=123, Percent_Identity=34.1463414634146, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640348, Length=268, Percent_Identity=30.5970149253731, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI24646055, Length=267, Percent_Identity=29.2134831460674, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012908 [H]

Pfam domain/function: PF00561 Abhydrolase_1; PF07819 PGAP1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 29372; Mature: 29372

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNVIARGPEDQSGGESARPPIVLLHGLFGRARNLGFFQRRLARTRRTLAIDLRNHGDS
CEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHEEEEEECCCCCC
PHGPMDYNTMADDLLDTLAHHAALPATLVGHSMGGKVAMTLALTRPGMVHSLLVADIPPA
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCC
RTGHGQFSLGEQMLRVKFPPYLNLAEADALLRPEIPNADVRALMLQNIRLGENPGWIIGL
CCCCCCHHHHHHHHEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCEECCCCCEEEEH
RDIVSSMTNIESWPYIPEGYTYPGPTLFLAGGNSPYIRREHFGVMRRLFPNYWLERIEEA
HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHC
GHWLHVENPTRFAALLEAFTEQY
CCEEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLNVIARGPEDQSGGESARPPIVLLHGLFGRARNLGFFQRRLARTRRTLAIDLRNHGDS
CEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHEEEEEECCCCCC
PHGPMDYNTMADDLLDTLAHHAALPATLVGHSMGGKVAMTLALTRPGMVHSLLVADIPPA
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCC
RTGHGQFSLGEQMLRVKFPPYLNLAEADALLRPEIPNADVRALMLQNIRLGENPGWIIGL
CCCCCCHHHHHHHHEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCEECCCCCEEEEH
RDIVSSMTNIESWPYIPEGYTYPGPTLFLAGGNSPYIRREHFGVMRRLFPNYWLERIEEA
HHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHC
GHWLHVENPTRFAALLEAFTEQY
CCEEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]