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The map label for this gene is lsdF [H]

Identifier: 162146307

GI number: 162146307

Start: 480672

End: 481901

Strand: Direct

Name: lsdF [H]

Synonym: GDI_0482

Alternate gene names: 162146307

Gene position: 480672-481901 (Clockwise)

Preceding gene: 162146306

Following gene: 162146308

Centisome position: 12.19

GC content: 73.66

Gene sequence:

>1230_bases
ATGGCTGAATTCAGCTTCACCGCCGTCGATGCGCAGGGTGCCCTGGTCCGCGGCACGCTGGAGGGCGAAACGGCGGAAGC
CGTCGTGGCCGCCCTGCGGCGGCGGGGGCATATTCCCATGCAGGTCGGCGCCCCCGGCCGGTGGACGCGGACGGTGGCAT
CGGGGCTGGGCGGCCTGGGCGGCTTGCGCCGCCGCGACCTGCGCCGGGGCGAACTGGCGGCGCTGACGCGGGAACTGGCC
GTCATGCTGGGCGCCGGGCAGGATATCGACCGGGCGCTGCGCTTCCTGGTCGAAAGCGTGCCGGGCGCGCGGGCGCGCGC
CGTGCTGGGCGGCGTTCGGGACCGGGTGCGCGACGGCCAGACCCTGCACGCGGCGATGGCGCGCTATCCGGGAAGTTTCC
CCCGGCTCTATATCGGCATGGTCCGCGCGGCCGAGGCCGGCGGCGACCTGGCGCCGACCATGGACCGGCTGGCGACGCTG
CTGGAACGGGAACGCGCGCTGGCCGCCACCGTGCAGTCGGCCATGATCTATCCCTGCATCCTGACGCTCGCGGCCTGCGG
GTCCATCGTCCTGCTGCTGACCGAGGTCCTGCCGCAATTCACGCCCCTGTTCGCGCAGAACGGCGCGGAACTGCCGGCCT
CGACCCGTCTGATGATCCGGGCCGGCGAACTGCTGGGCCGCTACGGCCTGCTGATCCCGCTGGTCCTGCTGGCGCTGGCC
GTGCTGGCGCGCGCCGTCCTGCGGTATCCCGGCGCCAGGCTGCGCCTGGATACGGGGCTGCTGGCCCTGCCGGTCGCGGG
CCGCCTGCTGCGCGAGGTCCTGGCGGCGCGCTTCACCCGCATCCTGGGCACGCTGCTGGAAAACGGGGTGCCGATCCTGG
GGGCGCTGTCGATCGTGCGCGACGCCATCGGCAACCGCGCGGTGGCGCGGGCCGTCGACGCGGCCACCCAGGCCGCCAAG
GGCGGGCGCGGCCTGTCCGCGGCGCTGGAGGCCGCGTCGATCTTCCCCCGCCGCACCGTGCACCTGCTGCGCCTGGGCGA
GGAAACGGCCCGGCTGGGGCCGATGGCGCTGCGGGCCGCCGACATCCATGAGGAACAGGTGCGCATCGCCACCCAGCGCC
TGGTCGCGCTTCTGGTGCCGGCCATCACCATCATCATGGGGCTGCTGGTGGCCGGGATCGTGTCGTCCCTGCTCCTTGCC
ATGCTGAGCCTGAACGACCTTGCGAAATAG

Upstream 100 bases:

>100_bases
CGGAATGGTCCCGATGTTCACCTCCGGCCTGGTCGCGGCCCTGAAGGGCGAGACGACGATCGAGGAAGTGACCCGCAGCG
TCCGGGCGGGAACGTGACGG

Downstream 100 bases:

>100_bases
CCCCCCGGATTCCGGCTTCACCCTGATCGAAATGATCGTGGTCGTCCTGATCCTCGGACTGATCGGGACGGTGCTGCTGA
CGCGCGGGCCGCTGCATTCC

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MAEFSFTAVDAQGALVRGTLEGETAEAVVAALRRRGHIPMQVGAPGRWTRTVASGLGGLGGLRRRDLRRGELAALTRELA
VMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHAAMARYPGSFPRLYIGMVRAAEAGGDLAPTMDRLATL
LERERALAATVQSAMIYPCILTLAACGSIVLLLTEVLPQFTPLFAQNGAELPASTRLMIRAGELLGRYGLLIPLVLLALA
VLARAVLRYPGARLRLDTGLLALPVAGRLLREVLAARFTRILGTLLENGVPILGALSIVRDAIGNRAVARAVDAATQAAK
GGRGLSAALEAASIFPRRTVHLLRLGEETARLGPMALRAADIHEEQVRIATQRLVALLVPAITIIMGLLVAGIVSSLLLA
MLSLNDLAK

Sequences:

>Translated_409_residues
MAEFSFTAVDAQGALVRGTLEGETAEAVVAALRRRGHIPMQVGAPGRWTRTVASGLGGLGGLRRRDLRRGELAALTRELA
VMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHAAMARYPGSFPRLYIGMVRAAEAGGDLAPTMDRLATL
LERERALAATVQSAMIYPCILTLAACGSIVLLLTEVLPQFTPLFAQNGAELPASTRLMIRAGELLGRYGLLIPLVLLALA
VLARAVLRYPGARLRLDTGLLALPVAGRLLREVLAARFTRILGTLLENGVPILGALSIVRDAIGNRAVARAVDAATQAAK
GGRGLSAALEAASIFPRRTVHLLRLGEETARLGPMALRAADIHEEQVRIATQRLVALLVPAITIIMGLLVAGIVSSLLLA
MLSLNDLAK
>Mature_408_residues
AEFSFTAVDAQGALVRGTLEGETAEAVVAALRRRGHIPMQVGAPGRWTRTVASGLGGLGGLRRRDLRRGELAALTRELAV
MLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQTLHAAMARYPGSFPRLYIGMVRAAEAGGDLAPTMDRLATLL
ERERALAATVQSAMIYPCILTLAACGSIVLLLTEVLPQFTPLFAQNGAELPASTRLMIRAGELLGRYGLLIPLVLLALAV
LARAVLRYPGARLRLDTGLLALPVAGRLLREVLAARFTRILGTLLENGVPILGALSIVRDAIGNRAVARAVDAATQAAKG
GRGLSAALEAASIFPRRTVHLLRLGEETARLGPMALRAADIHEEQVRIATQRLVALLVPAITIIMGLLVAGIVSSLLLAM
LSLNDLAK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=347, Percent_Identity=30.835734870317, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1786295, Length=340, Percent_Identity=27.6470588235294, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43247; Mature: 43116

Theoretical pI: Translated: 11.69; Mature: 11.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEFSFTAVDAQGALVRGTLEGETAEAVVAALRRRGHIPMQVGAPGRWTRTVASGLGGLG
CCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCC
GLRRRDLRRGELAALTRELAVMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
TLHAAMARYPGSFPRLYIGMVRAAEAGGDLAPTMDRLATLLERERALAATVQSAMIYPCI
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLAACGSIVLLLTEVLPQFTPLFAQNGAELPASTRLMIRAGELLGRYGLLIPLVLLALA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLARAVLRYPGARLRLDTGLLALPVAGRLLREVLAARFTRILGTLLENGVPILGALSIVR
HHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DAIGNRAVARAVDAATQAAKGGRGLSAALEAASIFPRRTVHLLRLGEETARLGPMALRAA
HHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHCHHHHHHCHHHHHHH
DIHEEQVRIATQRLVALLVPAITIIMGLLVAGIVSSLLLAMLSLNDLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEFSFTAVDAQGALVRGTLEGETAEAVVAALRRRGHIPMQVGAPGRWTRTVASGLGGLG
CCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCC
GLRRRDLRRGELAALTRELAVMLGAGQDIDRALRFLVESVPGARARAVLGGVRDRVRDGQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
TLHAAMARYPGSFPRLYIGMVRAAEAGGDLAPTMDRLATLLERERALAATVQSAMIYPCI
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLAACGSIVLLLTEVLPQFTPLFAQNGAELPASTRLMIRAGELLGRYGLLIPLVLLALA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLARAVLRYPGARLRLDTGLLALPVAGRLLREVLAARFTRILGTLLENGVPILGALSIVR
HHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DAIGNRAVARAVDAATQAAKGGRGLSAALEAASIFPRRTVHLLRLGEETARLGPMALRAA
HHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHCHHHHHHCHHHHHHH
DIHEEQVRIATQRLVALLVPAITIIMGLLVAGIVSSLLLAMLSLNDLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]