Click here to switch to the map view.

The map label for this gene is lsdH

Identifier: 162146308

GI number: 162146308

Start: 481891

End: 482313

Strand: Direct

Name: lsdH

Synonym: GDI_0483

Alternate gene names: NA

Gene position: 481891-482313 (Clockwise)

Preceding gene: 162146307

Following gene: 162146309

Centisome position: 12.22

GC content: 71.16

Gene sequence:

>423_bases
TTGCGAAATAGCCCCCCGGATTCCGGCTTCACCCTGATCGAAATGATCGTGGTCGTCCTGATCCTCGGACTGATCGGGAC
GGTGCTGCTGACGCGCGGGCCGCTGCATTCCATCACGCTCGATCTGCGCGGGGCGGGGCAGCAGCTGGCGTCCGCGATGC
GCCAGACGCGCATGCGGGCCATCGCGTCCGGCACGGCCGCCTTCTTCACGATCGATCCCGCCCGGGGGGATTACGGGGCG
GTTCCCGGCACGCGCCAGGCCCTGCCGAACGGGGTGGCGCTGGCCGGCGGCAGTACGACGCGGGTGGTCTTCTACCCCGA
CGGCAGCGCCTCCGTCGCGCGCATCGGCCTGGTCGAACGGGGGCGGCAGGTCACGCTGCGCACCAGCTGGCTGACCGGCG
CGGTCACCGTGGACGGACCATGA

Upstream 100 bases:

>100_bases
CTGGTCGCGCTTCTGGTGCCGGCCATCACCATCATCATGGGGCTGCTGGTGGCCGGGATCGTGTCGTCCCTGCTCCTTGC
CATGCTGAGCCTGAACGACC

Downstream 100 bases:

>100_bases
GCCCGAGACACGCCCGCGAACGCGGTTTCACCCTGATCGAGGTCCTGGTCGCCTTCGTCATCGTCATGCTGGCGCTGGGC
GTGGTGTACGAGGGAATAGC

Product: pseudopilin H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRNSPPDSGFTLIEMIVVVLILGLIGTVLLTRGPLHSITLDLRGAGQQLASAMRQTRMRAIASGTAAFFTIDPARGDYGA
VPGTRQALPNGVALAGGSTTRVVFYPDGSASVARIGLVERGRQVTLRTSWLTGAVTVDGP

Sequences:

>Translated_140_residues
MRNSPPDSGFTLIEMIVVVLILGLIGTVLLTRGPLHSITLDLRGAGQQLASAMRQTRMRAIASGTAAFFTIDPARGDYGA
VPGTRQALPNGVALAGGSTTRVVFYPDGSASVARIGLVERGRQVTLRTSWLTGAVTVDGP
>Mature_140_residues
MRNSPPDSGFTLIEMIVVVLILGLIGTVLLTRGPLHSITLDLRGAGQQLASAMRQTRMRAIASGTAAFFTIDPARGDYGA
VPGTRQALPNGVALAGGSTTRVVFYPDGSASVARIGLVERGRQVTLRTSWLTGAVTVDGP

Specific function: Unknown

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14590; Mature: 14590

Theoretical pI: Translated: 11.77; Mature: 11.77

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSPPDSGFTLIEMIVVVLILGLIGTVLLTRGPLHSITLDLRGAGQQLASAMRQTRMRA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
IASGTAAFFTIDPARGDYGAVPGTRQALPNGVALAGGSTTRVVFYPDGSASVARIGLVER
HHCCCEEEEEECCCCCCCCCCCCCHHHCCCCEEEECCCEEEEEEECCCCCCEEEEHHHHC
GRQVTLRTSWLTGAVTVDGP
CCEEEEEEEEEEEEEEECCC
>Mature Secondary Structure
MRNSPPDSGFTLIEMIVVVLILGLIGTVLLTRGPLHSITLDLRGAGQQLASAMRQTRMRA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
IASGTAAFFTIDPARGDYGAVPGTRQALPNGVALAGGSTTRVVFYPDGSASVARIGLVER
HHCCCEEEEEECCCCCCCCCCCCCHHHCCCCEEEECCCEEEEEEECCCCCCEEEEHHHHC
GRQVTLRTSWLTGAVTVDGP
CCEEEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA