| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is ygfF [C]
Identifier: 162146063
GI number: 162146063
Start: 243372
End: 244118
Strand: Direct
Name: ygfF [C]
Synonym: GDI_0231
Alternate gene names: 162146063
Gene position: 243372-244118 (Clockwise)
Preceding gene: 162146055
Following gene: 162146064
Centisome position: 6.17
GC content: 67.87
Gene sequence:
>747_bases ATGAGCAAGCTTTCAGGAAAAGTCGCGATCGTCACCGGCGCCTCCAAGGGGATCGGCGCGGGCATCGCCAAGGCGCTGGC GGCCGAAGGCGCCGCGGTCGTCGTCAATTATGCCTCCAGCAGGTCGGGGGCCGATACGGTCGTCGCGGCGATCACGGACG CGGGCGGCAAGGCCGTGGCGGTGCAGGGCGACGTCTCGCGCAAGGCCGACGCCCAGGGCCTGGTCGACGCCGCGATCGGC CAGTTCGGCCGTCTGGACATTCTGGTCAACAATTCCGGCGTCTATGAATTCGGCGCGATCGAGGAGATCACCGAGGAGCA TTTCCACCGGCAGTTCAACGTCAACGTGCTGGGCACGCTGCTGACGACCCAGGCCGCGGTCGGCCATCTGGGCGCGGGCG GCAGCATCATCAATATCAGTTCGGTCGTCTCGCGCATCACCCCGCCCCATTCGGCGGTCTATACCGGGACCAAGGGCGCG ATCGACGCCATCACCGGTTCGCTGGCGCGCGAACTGGGGCCGAGGCAGATCCGGGTCAACGCCATCAATCCCGGCCTGGT CCAGACCGAAGGGACGCAGACCGCGAACGTCGTCGGCTCGGAGATGGAGCAGGCCATCATCGCGCAGACGCCGCTGGGCC GCACCGGCCAGGTGCAGGATATCGCGCCGCTGGCGGTTTTCCTGGCGTCCGATGACGCACGGTGGCTGACCGGCGAAACG CTGATCGCCTCCGGCGGCCTGCGCTGA
Upstream 100 bases:
>100_bases GTATCTTGGAGCAGTCACTCCAAATTGTAAGCCTTTCGTTTCCGCAATCCGGGCATGAGGAACGCGCGTCGTTCCCGCCC GAGCAGACAGGTCCAGCACC
Downstream 100 bases:
>100_bases GTCGAGCTGAGCATCGCCCCGACAGGGGCGGGCGCCTGCTTGCAGCGCGGGAAGGGCAGGCGCATGCTTTTTCAGGATTT CATATCTGGCCGGGAGATGA
Product: 3-oxoacyl-[acyl-carrier-protein] reductase
Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSKLSGKVAIVTGASKGIGAGIAKALAAEGAAVVVNYASSRSGADTVVAAITDAGGKAVAVQGDVSRKADAQGLVDAAIG QFGRLDILVNNSGVYEFGAIEEITEEHFHRQFNVNVLGTLLTTQAAVGHLGAGGSIINISSVVSRITPPHSAVYTGTKGA IDAITGSLARELGPRQIRVNAINPGLVQTEGTQTANVVGSEMEQAIIAQTPLGRTGQVQDIAPLAVFLASDDARWLTGET LIASGGLR
Sequences:
>Translated_248_residues MSKLSGKVAIVTGASKGIGAGIAKALAAEGAAVVVNYASSRSGADTVVAAITDAGGKAVAVQGDVSRKADAQGLVDAAIG QFGRLDILVNNSGVYEFGAIEEITEEHFHRQFNVNVLGTLLTTQAAVGHLGAGGSIINISSVVSRITPPHSAVYTGTKGA IDAITGSLARELGPRQIRVNAINPGLVQTEGTQTANVVGSEMEQAIIAQTPLGRTGQVQDIAPLAVFLASDDARWLTGET LIASGGLR >Mature_247_residues SKLSGKVAIVTGASKGIGAGIAKALAAEGAAVVVNYASSRSGADTVVAAITDAGGKAVAVQGDVSRKADAQGLVDAAIGQ FGRLDILVNNSGVYEFGAIEEITEEHFHRQFNVNVLGTLLTTQAAVGHLGAGGSIINISSVVSRITPPHSAVYTGTKGAI DAITGSLARELGPRQIRVNAINPGLVQTEGTQTANVVGSEMEQAIIAQTPLGRTGQVQDIAPLAVFLASDDARWLTGETL IASGGLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=35.3658536585366, Blast_Score=135, Evalue=3e-32, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=37.0967741935484, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=32.7868852459016, Blast_Score=121, Evalue=6e-28, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=33.0739299610895, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI59889578, Length=219, Percent_Identity=35.6164383561644, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=32.4110671936759, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=30.6122448979592, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=27.843137254902, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=34.4086021505376, Blast_Score=94, Evalue=9e-20, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=31.7647058823529, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=31.3492063492063, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4758504, Length=260, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=32.8205128205128, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI33667109, Length=228, Percent_Identity=29.3859649122807, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI109715829, Length=200, Percent_Identity=32.5, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI4504505, Length=255, Percent_Identity=30.1960784313725, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI4503301, Length=251, Percent_Identity=27.8884462151394, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI44680136, Length=241, Percent_Identity=25.7261410788382, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI44680133, Length=241, Percent_Identity=25.7261410788382, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI17738292, Length=241, Percent_Identity=25.7261410788382, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI83715985, Length=185, Percent_Identity=30.2702702702703, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI224922801, Length=181, Percent_Identity=30.3867403314917, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI32455239, Length=200, Percent_Identity=32.5, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI5031765, Length=200, Percent_Identity=32.5, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=29.5336787564767, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=29.1457286432161, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=27.8350515463918, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=34.8623853211009, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=36.5853658536585, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=35.7429718875502, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=35.6, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=35.2, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=33.7209302325581, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=33.0645161290323, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.1204819277108, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=31.8367346938775, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=30.1255230125523, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=29.3650793650794, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=28.6274509803922, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788891, Length=261, Percent_Identity=30.6513409961686, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=29.296875, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787545, Length=261, Percent_Identity=26.4367816091954, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1786701, Length=206, Percent_Identity=30.0970873786408, Blast_Score=62, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=36.1111111111111, Blast_Score=137, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=34.2741935483871, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=32.8358208955224, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=33.6032388663968, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=32.8185328185328, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=32.5842696629214, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.1428571428571, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=32.089552238806, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=32.3886639676113, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI71994600, Length=262, Percent_Identity=32.0610687022901, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=32.3420074349442, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=30.7116104868914, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=30.0751879699248, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=30.7116104868914, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=31.6981132075472, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=31.1787072243346, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI72000259, Length=277, Percent_Identity=30.3249097472924, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=28.9473684210526, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=31.4393939393939, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=29.6296296296296, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=31.9391634980989, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=30.6818181818182, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17563726, Length=280, Percent_Identity=27.5, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=29.7709923664122, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=31.7991631799163, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=31.6062176165803, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=29.277566539924, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=26.9076305220884, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17561272, Length=250, Percent_Identity=30, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=31.7708333333333, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71997402, Length=216, Percent_Identity=27.3148148148148, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71997099, Length=229, Percent_Identity=30.5676855895196, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=27.710843373494, Blast_Score=83, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=241, Percent_Identity=28.2157676348548, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=29.2, Blast_Score=79, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6322226, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=191, Percent_Identity=30.8900523560209, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=38.1889763779528, Blast_Score=148, Evalue=3e-36, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=37.4015748031496, Blast_Score=144, Evalue=7e-35, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=38.3064516129032, Blast_Score=138, Evalue=4e-33, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.4, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=33.4677419354839, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=35.4838709677419, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.4, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=31.7269076305221, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=31.6326530612245, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=31.4432989690722, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=31.0344827586207, Blast_Score=77, Evalue=7e-15, Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=29.5566502463054, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI18859837, Length=218, Percent_Identity=31.651376146789, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=29.9492385786802, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24663911, Length=234, Percent_Identity=26.4957264957265, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=30.5418719211823, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=26.0204081632653, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640492, Length=195, Percent_Identity=25.1282051282051, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI116007238, Length=190, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24648944, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=238, Percent_Identity=30.672268907563, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24656154, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI19922628, Length=234, Percent_Identity=26.0683760683761, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24649181, Length=204, Percent_Identity=28.921568627451, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100
Molecular weight: Translated: 25109; Mature: 24977
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLSGKVAIVTGASKGIGAGIAKALAAEGAAVVVNYASSRSGADTVVAAITDAGGKAVA CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE VQGDVSRKADAQGLVDAAIGQFGRLDILVNNSGVYEFGAIEEITEEHFHRQFNVNVLGTL EECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCEECCCHHHHHHHHHHHCCCHHHHHHH LTTQAAVGHLGAGGSIINISSVVSRITPPHSAVYTGTKGAIDAITGSLARELGPRQIRVN HHHHHHHHCCCCCCCEEEHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEE AINPGLVQTEGTQTANVVGSEMEQAIIAQTPLGRTGQVQDIAPLAVFLASDDARWLTGET ECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCEEEEEEECCCCCEEECCE LIASGGLR EEECCCCC >Mature Secondary Structure SKLSGKVAIVTGASKGIGAGIAKALAAEGAAVVVNYASSRSGADTVVAAITDAGGKAVA CCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE VQGDVSRKADAQGLVDAAIGQFGRLDILVNNSGVYEFGAIEEITEEHFHRQFNVNVLGTL EECCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCEECCCHHHHHHHHHHHCCCHHHHHHH LTTQAAVGHLGAGGSIINISSVVSRITPPHSAVYTGTKGAIDAITGSLARELGPRQIRVN HHHHHHHHCCCCCCCEEEHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEE AINPGLVQTEGTQTANVVGSEMEQAIIAQTPLGRTGQVQDIAPLAVFLASDDARWLTGET ECCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCEEEEEEECCCCCEEECCE LIASGGLR EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+
Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]