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The map label for this gene is ybgK [H]

Identifier: 162146036

GI number: 162146036

Start: 218949

End: 219920

Strand: Reverse

Name: ybgK [H]

Synonym: GDI_0204

Alternate gene names: 162146036

Gene position: 219920-218949 (Counterclockwise)

Preceding gene: 162146037

Following gene: 162146035

Centisome position: 5.58

GC content: 70.78

Gene sequence:

>972_bases
ATGATCGAAATCCTTGCCAATTCGGCGCTGAACACCATTCAGGACCGGGGCCGTCCCCGGGCCATGACCCTGGGTGTCGC
GCGGGGCGGGGCAATGGACATACTGGCCCTGGCCTGCGGCAACATGATGCTGGGCAACGAGCCGGACGCGGCGGGAATCG
AGATCGCCTTCTTCCCGTTCCGTCTTCGTTTCCTGGATGATCGCGCCTTCGCCGTCACCGGCGCGCGCGGTCCCGTCCGG
CTGGACGGTATCGACCTGCCGCCCGACTGGGCCATGATCGCGCGGGCCGGGCAGACGCTGCAATGCGACGCCCCGACCAC
GGGATGCCGCACCTATCTGACCATCGCGGGCGGGATCGACGTGCCCCTGGTGCTGGGCGCCCGTGCCACCGACCTGAAGG
GCGGGTTCGGCGGGCTGGAGGGGCGCGCGCTGCAAAAGGGCGACCGGCTGCCCTGCGGCGTACCCGCGACGCCCGGCGTG
CCGCCGCACGGCTACGGCCTGGCGGTCCGATGCCCCATGCCCGACGCCGACGCCACCCGCGTGCGCGTGCTGCCCGCCGC
CGAATATGACGATTTTACCGCCGAGGCGCGGCATGCGTTCTTCCAGACCGCCTGGCGGCTGACGCCGAGCGCCAACCGCA
TGGGCTATCGTCTGGAGGGCACACCGTTGGCCCAGCAACGGCCGCTGAACCTGTTTTCGCACGGGATCGTGCCCGGAACG
GTCCAGGTGCCACCTGCCGGACAGCCGATCGTCCAGATGGCCGACGCCAACACCTGCGGCGGGTATCCGAAGATCGCCAC
CATCATCGAATCCGACCTGCGCCTGCTGGCCCAGACCCGCGTGAACGGCAGCATCCGCTTCGTCGAGACCACGCGCACGG
ACGCCGTCGCCGCGCTGCGGGCCGAGGCCCGGGACCAGGCGCGCCGCGCGGACGCGTTCGCCGATCTGCGCCGCATGCTG
ATGCCGGCATGA

Upstream 100 bases:

>100_bases
GGCACATCATCGGGCGGACGACCCTGCCGCTGTTCGACCCGCACCGCCCGGATCCGGGCGTCCTGCGCATTGGCGACACC
GTACGCTTCACGAGGGTCGC

Downstream 100 bases:

>100_bases
TTCCACAGGAGACCGTCCCCATGACCGACCGCAAGACCATCGACCTGAATGCCGACCTGGGCGAAAGCTTCGGCCACTAC
ACGATCGGCAATGACGCGGC

Product: allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MIEILANSALNTIQDRGRPRAMTLGVARGGAMDILALACGNMMLGNEPDAAGIEIAFFPFRLRFLDDRAFAVTGARGPVR
LDGIDLPPDWAMIARAGQTLQCDAPTTGCRTYLTIAGGIDVPLVLGARATDLKGGFGGLEGRALQKGDRLPCGVPATPGV
PPHGYGLAVRCPMPDADATRVRVLPAAEYDDFTAEARHAFFQTAWRLTPSANRMGYRLEGTPLAQQRPLNLFSHGIVPGT
VQVPPAGQPIVQMADANTCGGYPKIATIIESDLRLLAQTRVNGSIRFVETTRTDAVAALRAEARDQARRADAFADLRRML
MPA

Sequences:

>Translated_323_residues
MIEILANSALNTIQDRGRPRAMTLGVARGGAMDILALACGNMMLGNEPDAAGIEIAFFPFRLRFLDDRAFAVTGARGPVR
LDGIDLPPDWAMIARAGQTLQCDAPTTGCRTYLTIAGGIDVPLVLGARATDLKGGFGGLEGRALQKGDRLPCGVPATPGV
PPHGYGLAVRCPMPDADATRVRVLPAAEYDDFTAEARHAFFQTAWRLTPSANRMGYRLEGTPLAQQRPLNLFSHGIVPGT
VQVPPAGQPIVQMADANTCGGYPKIATIIESDLRLLAQTRVNGSIRFVETTRTDAVAALRAEARDQARRADAFADLRRML
MPA
>Mature_323_residues
MIEILANSALNTIQDRGRPRAMTLGVARGGAMDILALACGNMMLGNEPDAAGIEIAFFPFRLRFLDDRAFAVTGARGPVR
LDGIDLPPDWAMIARAGQTLQCDAPTTGCRTYLTIAGGIDVPLVLGARATDLKGGFGGLEGRALQKGDRLPCGVPATPGV
PPHGYGLAVRCPMPDADATRVRVLPAAEYDDFTAEARHAFFQTAWRLTPSANRMGYRLEGTPLAQQRPLNLFSHGIVPGT
VQVPPAGQPIVQMADANTCGGYPKIATIIESDLRLLAQTRVNGSIRFVETTRTDAVAALRAEARDQARRADAFADLRRML
MPA

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=304, Percent_Identity=41.1184210526316, Blast_Score=228, Evalue=4e-61,
Organism=Saccharomyces cerevisiae, GI6319685, Length=345, Percent_Identity=28.4057971014493, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 34488; Mature: 34488

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEILANSALNTIQDRGRPRAMTLGVARGGAMDILALACGNMMLGNEPDAAGIEIAFFPF
CEEEECHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCEEEEEEEE
RLRFLDDRAFAVTGARGPVRLDGIDLPPDWAMIARAGQTLQCDAPTTGCRTYLTIAGGID
EEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHCCCCEEEECCCCCCCEEEEEEECCCC
VPLVLGARATDLKGGFGGLEGRALQKGDRLPCGVPATPGVPPHGYGLAVRCPMPDADATR
EEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCE
VRVLPAAEYDDFTAEARHAFFQTAWRLTPSANRMGYRLEGTPLAQQRPLNLFSHGIVPGT
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
VQVPPAGQPIVQMADANTCGGYPKIATIIESDLRLLAQTRVNGSIRFVETTRTDAVAALR
EECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHH
AEARDQARRADAFADLRRMLMPA
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEILANSALNTIQDRGRPRAMTLGVARGGAMDILALACGNMMLGNEPDAAGIEIAFFPF
CEEEECHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCEEEEEEEE
RLRFLDDRAFAVTGARGPVRLDGIDLPPDWAMIARAGQTLQCDAPTTGCRTYLTIAGGID
EEEEECCCEEEEECCCCCEEECCCCCCCCHHHHHCCCCEEEECCCCCCCEEEEEEECCCC
VPLVLGARATDLKGGFGGLEGRALQKGDRLPCGVPATPGVPPHGYGLAVRCPMPDADATR
EEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCE
VRVLPAAEYDDFTAEARHAFFQTAWRLTPSANRMGYRLEGTPLAQQRPLNLFSHGIVPGT
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCE
VQVPPAGQPIVQMADANTCGGYPKIATIIESDLRLLAQTRVNGSIRFVETTRTDAVAALR
EECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHH
AEARDQARRADAFADLRRMLMPA
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]