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The map label for this gene is ybgJ [H]

Identifier: 162146037

GI number: 162146037

Start: 219917

End: 220558

Strand: Reverse

Name: ybgJ [H]

Synonym: GDI_0205

Alternate gene names: 162146037

Gene position: 220558-219917 (Counterclockwise)

Preceding gene: 162146038

Following gene: 162146036

Centisome position: 5.59

GC content: 73.83

Gene sequence:

>642_bases
ATGATCCGCCTGAGCATGGCCGGCACCGGCGCCATCCTGCTGGACGCCGCAGCAGGCCCGTTCGACGCCGCGACGCAGCG
CCGGATCTGGGCGGCGGCGCGCGCCCTGGCCGGCCAGCCGTCGGTCGTGCAGGCGGTGCCGGGGGTCAACAACCTGCTGG
TCACGTTCGATGCGCTCCGCACCGAACCCGATGCGGTCGAAGACCTGATCCGCCGGACCTGGGCCGCCGCCGCCGCCGAG
GAGATCCCGGCGCGCGAGATCGAAATTCCCGTCACCTATGGCGGCGCCTTCGGCGAGGACCTGGCCCTGGTGGCGGCGCA
TGCCGGCCTGTCGGAGGAGGAGACCATCGCCGCGCATCTGGCCGGGCGCTACAGCGTGGCCGCCATCGGGGCGATGGCGG
GCTTTGCCTACATGACCGGGCTGGATTCGCGCCTGGCCGTGCCGCGTCGCGACACGCCCCGGCTGAGCGTGGAGCGCGGG
GCCGTGGTGGTGGGCGGGGGCCACGCGGGCGTCATGCCCTGCACCGCGCCCTCCGGCTGGCACATCATCGGGCGGACGAC
CCTGCCGCTGTTCGACCCGCACCGCCCGGATCCGGGCGTCCTGCGCATTGGCGACACCGTACGCTTCACGAGGGTCGCAT
GA

Upstream 100 bases:

>100_bases
TCTACATCACCGCCGGCATCATCCTGTGCGGCGCGGCGGCGGCGCTGACGATGCCGCGCCGCATGATCCATGCCCGGCCC
GTCGCGCGGGGCGCGGCAGG

Downstream 100 bases:

>100_bases
TCGAAATCCTTGCCAATTCGGCGCTGAACACCATTCAGGACCGGGGCCGTCCCCGGGCCATGACCCTGGGTGTCGCGCGG
GGCGGGGCAATGGACATACT

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MIRLSMAGTGAILLDAAAGPFDAATQRRIWAAARALAGQPSVVQAVPGVNNLLVTFDALRTEPDAVEDLIRRTWAAAAAE
EIPAREIEIPVTYGGAFGEDLALVAAHAGLSEEETIAAHLAGRYSVAAIGAMAGFAYMTGLDSRLAVPRRDTPRLSVERG
AVVVGGGHAGVMPCTAPSGWHIIGRTTLPLFDPHRPDPGVLRIGDTVRFTRVA

Sequences:

>Translated_213_residues
MIRLSMAGTGAILLDAAAGPFDAATQRRIWAAARALAGQPSVVQAVPGVNNLLVTFDALRTEPDAVEDLIRRTWAAAAAE
EIPAREIEIPVTYGGAFGEDLALVAAHAGLSEEETIAAHLAGRYSVAAIGAMAGFAYMTGLDSRLAVPRRDTPRLSVERG
AVVVGGGHAGVMPCTAPSGWHIIGRTTLPLFDPHRPDPGVLRIGDTVRFTRVA
>Mature_213_residues
MIRLSMAGTGAILLDAAAGPFDAATQRRIWAAARALAGQPSVVQAVPGVNNLLVTFDALRTEPDAVEDLIRRTWAAAAAE
EIPAREIEIPVTYGGAFGEDLALVAAHAGLSEEETIAAHLAGRYSVAAIGAMAGFAYMTGLDSRLAVPRRDTPRLSVERG
AVVVGGGHAGVMPCTAPSGWHIIGRTTLPLFDPHRPDPGVLRIGDTVRFTRVA

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=209, Percent_Identity=44.9760765550239, Blast_Score=169, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 22252; Mature: 22252

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLSMAGTGAILLDAAAGPFDAATQRRIWAAARALAGQPSVVQAVPGVNNLLVTFDALR
CEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEHHHC
TEPDAVEDLIRRTWAAAAAEEIPAREIEIPVTYGGAFGEDLALVAAHAGLSEEETIAAHL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEHHCCCCCCHHHHHHH
AGRYSVAAIGAMAGFAYMTGLDSRLAVPRRDTPRLSVERGAVVVGGGHAGVMPCTAPSGW
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCEECCCCCCC
HIIGRTTLPLFDPHRPDPGVLRIGDTVRFTRVA
EEEEEEECCCCCCCCCCCCEEEECCCEEEEECC
>Mature Secondary Structure
MIRLSMAGTGAILLDAAAGPFDAATQRRIWAAARALAGQPSVVQAVPGVNNLLVTFDALR
CEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEHHHC
TEPDAVEDLIRRTWAAAAAEEIPAREIEIPVTYGGAFGEDLALVAAHAGLSEEETIAAHL
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEHHCCCCCCHHHHHHH
AGRYSVAAIGAMAGFAYMTGLDSRLAVPRRDTPRLSVERGAVVVGGGHAGVMPCTAPSGW
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCEECCCCCCC
HIIGRTTLPLFDPHRPDPGVLRIGDTVRFTRVA
EEEEEEECCCCCCCCCCCCEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]