Click here to switch to the map view.

The map label for this gene is 162145902

Identifier: 162145902

GI number: 162145902

Start: 70757

End: 70981

Strand: Direct

Name: 162145902

Synonym: GDI_0064

Alternate gene names: NA

Gene position: 70757-70981 (Clockwise)

Preceding gene: 162145895

Following gene: 162145903

Centisome position: 1.79

GC content: 64.89

Gene sequence:

>225_bases
ATGCTCACGCGCACGACCTTGTTTCTCTCCAATCGTTCCCAGGCGGTTCGCCTGCCGAAGGCCGTGGCCTTTGGAGAAGG
CGTGCGGGAGGTGGTGATTGTTCCCGAAGGCCCGCGTCGGATTATCGCGCCCGCTGAAGCAGCCTGGGACGATTTTTTCG
CCGCTCCCGGCCTGGACCTGGGGGAACGCAGCCAGCCGGCGATGCAGGAACGGGAGCGCTTCTGA

Upstream 100 bases:

>100_bases
TATTATGATGGTGGGGTTCGAAGGACCGAGCGGGCTAAAGAATATGCTACGCGGTTGAATTGGATATGCTGTATGTATAT
CCATACAGGAGGCGAAGCCG

Downstream 100 bases:

>100_bases
TGCTGCGCTTTCTGCTGGACACCAACTTGTGCATCCGTGTGTTGCGGGACCGGCCGCAGGGCCTGCGGGCGCGGTTCAAT
GCCTACGCCGAAGACCTCTG

Product: virulence-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDLGERSQPAMQERERF

Sequences:

>Translated_74_residues
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDLGERSQPAMQERERF
>Mature_74_residues
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDLGERSQPAMQERERF

Specific function: Unknown

COG id: COG4456

COG function: function code S; Virulence-associated protein and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 8241; Mature: 8241

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDL
CCCCEEEEECCCCCEEECCHHHHCCCCCEEEEEECCCCCEEECCCCCCCHHHHCCCCCCC
GERSQPAMQERERF
CCCCCCCHHHHCCC
>Mature Secondary Structure
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDL
CCCCEEEEECCCCCEEECCHHHHCCCCCEEEEEECCCCCEEECCCCCCCHHHHCCCCCCC
GERSQPAMQERERF
CCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9171415; 12384590 [H]