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The map label for this gene is 162145903

Identifier: 162145903

GI number: 162145903

Start: 70981

End: 71391

Strand: Direct

Name: 162145903

Synonym: GDI_0065

Alternate gene names: NA

Gene position: 70981-71391 (Clockwise)

Preceding gene: 162145902

Following gene: 162145912

Centisome position: 1.8

GC content: 63.75

Gene sequence:

>411_bases
ATGCTGCGCTTTCTGCTGGACACCAACTTGTGCATCCGTGTGTTGCGGGACCGGCCGCAGGGCCTGCGGGCGCGGTTCAA
TGCCTACGCCGAAGACCTCTGTATCTCCGATGTCGTGCTATACGAACTGCTCTATGGGGCGGAGCGGTCGTCCGATCCCG
TGCGTGTCAGGCGAGAGGTCGAGCATTTCGCGGACAGACTGAATGTCCTGCCGTTCGACAGCGCGGCGGCGTCCCATACG
GCCGAGATCCGGGACGATCTCGAACGCAGGGGCTGCGTGATCGGCCCCTATGATCTGATGATCGCGGGACACGCCCGCAG
CCGGGGGTTGGTGGTCGTCACAGGCAATCTGGGCGAGTTCAGGCGCGTTGCGGGGCTCAGGGCCGAAGACTGGTTCACGA
ATGTTGCCTGA

Upstream 100 bases:

>100_bases
TCGCGCCCGCTGAAGCAGCCTGGGACGATTTTTTCGCCGCTCCCGGCCTGGACCTGGGGGAACGCAGCCAGCCGGCGATG
CAGGAACGGGAGCGCTTCTG

Downstream 100 bases:

>100_bases
CGGGTATCGTCACGCGATCAGACCTTTGACCCGGACGATCCGCACAAGGTAAAATTATCATTGGTCGCTTTACCCGAAGC
GTGGATTGAAACGTTTTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREVEHFADRLNVLPFDSAAASHT
AEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEFRRVAGLRAEDWFTNVA

Sequences:

>Translated_136_residues
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREVEHFADRLNVLPFDSAAASHT
AEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEFRRVAGLRAEDWFTNVA
>Mature_136_residues
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREVEHFADRLNVLPFDSAAASHT
AEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEFRRVAGLRAEDWFTNVA

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15420; Mature: 15420

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREV
CEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
EHFADRLNVLPFDSAAASHTAEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEF
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCHHEEEECCCCCCCEEEEECCCHHH
RRVAGLRAEDWFTNVA
HHHHCCCCHHHHCCCC
>Mature Secondary Structure
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREV
CEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
EHFADRLNVLPFDSAAASHTAEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEF
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCHHEEEECCCCCCCEEEEECCCHHH
RRVAGLRAEDWFTNVA
HHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]