Click here to switch to the map view.

The map label for this gene is yabD [H]

Identifier: 161870535

GI number: 161870535

Start: 1630491

End: 1631336

Strand: Reverse

Name: yabD [H]

Synonym: NMCC_1600

Alternate gene names: 161870535

Gene position: 1631336-1630491 (Counterclockwise)

Preceding gene: 161870536

Following gene: 161870534

Centisome position: 75.76

GC content: 57.68

Gene sequence:

>846_bases
ATGCGCCGCCCGTACACGGCATCCCTTGCCGCCCTGCCTTATTTTTATGTGAACCTGCCGCATTGCGGAATCGAAATGAA
CTTCACCGACACCCACTGCCACCTTGCCGATGCCGCCCTGCGCGAAAACCTGCCGCACATCCTGACCGCCGCGCGGAAAG
TTGGGGTGAAGCGGTTTATCGTTCCCGCCACCTGTCCGCAGGATTGGCAAAGCGTGGCGGAACTGTCGGAAATGCCGTCC
GAACACGGTCAAATCCGTATTGCGCTCGGCATCCATCCTTGGTTTTCAGACGGCATTGCCGAGCGTGATTGCGTCCGCCT
GGAAGCGATGTTGGCACGTTATCCGCAGGCATGGGTCGGCGAAATCGGCTTGGATTTTTACGACAAAACCCAAACGCCGC
AGCAGCGCGAACGGCAAATCCAAGTCTTCAGCCGCCAGCTTGCCATCGCGCAAACCCTGCGCCGCCGCGTGATTATCCAT
AATCTCAAAGCCACCGCCGACATCGCCGCCGCCGTCAAACAGACAGGCTTTGCCCAAGGCGGCATCGTTCACGCCTTCTC
AGGCAGCGCGGAAGAAGCGCGCGTGTTGACGAAACTGGGTTTCAAAATCGGCATCGGTTCGTTGTTGCTCAATCCGAACG
CGCGTAAAGTGCGCGATACGCTTAAAGCCTTGAACGACGGGGATTTCGTATTGGAAACCGACAGCCCGTTTATGCTGAAA
AAAGAGATTAATACGCCTGCCAATATTCTTTGGATTGCCGAAATTGCCGCGCAGATACGCGGTGTCGGCGTGGCGGACAT
CGCCGCGATAACGGAACGCAATGCCGACAGCCTGCTCCGTCCCTAG

Upstream 100 bases:

>100_bases
CGTATCGCAAGGCTGGGGCGCGGAAGATGTAGAAAAAGAGTTGGCAAGACTGAAGTTATAGCGGATTGAAATGGCAATGA
CGGGGCGTTGACCGCGCCTT

Downstream 100 bases:

>100_bases
ATTATCTTTTTGAATATTCAGAAAATATATTATAATGACCGCGTTTTGATGCCGTCTGAAATTCAGGCGGCGTTTGTTAT
GGAAGAATTATGAAGCCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRRPYTASLAALPYFYVNLPHCGIEMNFTDTHCHLADAALRENLPHILTAARKVGVKRFIVPATCPQDWQSVAELSEMPS
EHGQIRIALGIHPWFSDGIAERDCVRLEAMLARYPQAWVGEIGLDFYDKTQTPQQRERQIQVFSRQLAIAQTLRRRVIIH
NLKATADIAAAVKQTGFAQGGIVHAFSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLK
KEINTPANILWIAEIAAQIRGVGVADIAAITERNADSLLRP

Sequences:

>Translated_281_residues
MRRPYTASLAALPYFYVNLPHCGIEMNFTDTHCHLADAALRENLPHILTAARKVGVKRFIVPATCPQDWQSVAELSEMPS
EHGQIRIALGIHPWFSDGIAERDCVRLEAMLARYPQAWVGEIGLDFYDKTQTPQQRERQIQVFSRQLAIAQTLRRRVIIH
NLKATADIAAAVKQTGFAQGGIVHAFSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLK
KEINTPANILWIAEIAAQIRGVGVADIAAITERNADSLLRP
>Mature_281_residues
MRRPYTASLAALPYFYVNLPHCGIEMNFTDTHCHLADAALRENLPHILTAARKVGVKRFIVPATCPQDWQSVAELSEMPS
EHGQIRIALGIHPWFSDGIAERDCVRLEAMLARYPQAWVGEIGLDFYDKTQTPQQRERQIQVFSRQLAIAQTLRRRVIIH
NLKATADIAAAVKQTGFAQGGIVHAFSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLK
KEINTPANILWIAEIAAQIRGVGVADIAAITERNADSLLRP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=27.9245283018868, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=27.5471698113208, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=27.4074074074074, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=27.2373540856031, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI225903424, Length=230, Percent_Identity=28.2608695652174, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=30.6201550387597, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=28.0155642023346, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI48994985, Length=263, Percent_Identity=25.0950570342205, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17559024, Length=290, Percent_Identity=24.8275862068966, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=26.4150943396226, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI221330018, Length=229, Percent_Identity=31.4410480349345, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648690, Length=230, Percent_Identity=26.5217391304348, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31143; Mature: 31143

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPYTASLAALPYFYVNLPHCGIEMNFTDTHCHLADAALRENLPHILTAARKVGVKRFI
CCCCCCHHHHHHCEEEEECCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHEEE
VPATCPQDWQSVAELSEMPSEHGQIRIALGIHPWFSDGIAERDCVRLEAMLARYPQAWVG
ECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHCCCCCHHHHHHHHHHHHHCCHHHHH
EIGLDFYDKTQTPQQRERQIQVFSRQLAIAQTLRRRVIIHNLKATADIAAAVKQTGFAQG
HHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GIVHAFSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLK
CEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEECCCCEEEE
KEINTPANILWIAEIAAQIRGVGVADIAAITERNADSLLRP
ECCCCCHHEEHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure
MRRPYTASLAALPYFYVNLPHCGIEMNFTDTHCHLADAALRENLPHILTAARKVGVKRFI
CCCCCCHHHHHHCEEEEECCCCCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHEEE
VPATCPQDWQSVAELSEMPSEHGQIRIALGIHPWFSDGIAERDCVRLEAMLARYPQAWVG
ECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHCCCCCHHHHHHHHHHHHHCCHHHHH
EIGLDFYDKTQTPQQRERQIQVFSRQLAIAQTLRRRVIIHNLKATADIAAAVKQTGFAQG
HHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GIVHAFSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLK
CEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEECCCCEEEE
KEINTPANILWIAEIAAQIRGVGVADIAAITERNADSLLRP
ECCCCCHHEEHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]