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The map label for this gene is rpoZ [H]

Identifier: 161870507

GI number: 161870507

Start: 1600161

End: 1600367

Strand: Reverse

Name: rpoZ [H]

Synonym: NMCC_1570

Alternate gene names: 161870507

Gene position: 1600367-1600161 (Counterclockwise)

Preceding gene: 161870508

Following gene: 161870506

Centisome position: 74.32

GC content: 54.59

Gene sequence:

>207_bases
ATGGCACGTATTACCACCGAAGACTGTACCGGAAAAATTTCCAACCATTTTGACCTGACATTGGTAGCGGCCCGCCGCGC
CCGCCAGCTTGAGAACGGCAACACGCCGCTTGTGGACGATGCCCGCAATAACAAACCGACCGTTACCGCCTTAAGGGAAA
TCGCCGCCGGGCATATCGGTACGGAACTGTTGACGCGCAATAAATAA

Upstream 100 bases:

>100_bases
CGGCAACTGGGATTTATTGCAGATTTGTTGGAAAATTCCTAAAAAACCGCGAAAATACCCAGTTTCCCAATTTAAATATT
TTTGAAAGAAAGCAAATAAT

Downstream 100 bases:

>100_bases
ATTCTGCCGGAAACGCACGTCGGCACATTCTGCCGCCGTGCAGTCCGACGGTTTGAAACGAAAAATAAAATATGTTCCGA
AAGCCGTCTGAAATGCCTGT

Product: DNA-directed RNA polymerase omega chain

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDARNNKPTVTALREIAAGHIGTELLTRNK

Sequences:

>Translated_68_residues
MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDARNNKPTVTALREIAAGHIGTELLTRNK
>Mature_67_residues
ARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDARNNKPTVTALREIAAGHIGTELLTRNK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=55.3846153846154, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 7472; Mature: 7340

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDARNNKPTVTALREIAAGHIG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
TELLTRNK
HHHHCCCC
>Mature Secondary Structure 
ARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDARNNKPTVTALREIAAGHIG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
TELLTRNK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA