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The map label for this gene is sohB [H]

Identifier: 161870442

GI number: 161870442

Start: 1519065

End: 1520117

Strand: Reverse

Name: sohB [H]

Synonym: NMCC_1491

Alternate gene names: 161870442

Gene position: 1520117-1519065 (Counterclockwise)

Preceding gene: 161870443

Following gene: 161870432

Centisome position: 70.59

GC content: 48.34

Gene sequence:

>1053_bases
ATGTGGAAAGAAATTTTACTGAATTACGGTATTTTCCTGCTCGAACTGCTTACCGTGTTCGGCGCAATTGCGCTGATTGT
GTTGGCTATCGTACAGAGTAAGAAACAGTCGGAAAGCGGCAGTGTCGTACTGACGGATTTTTCGGAAAATTATAAAAAAC
AGCGGCAATCGTTTGAAGCATTCTTTTTAAGCGGGGAAGAGGCAAAACATCAGGAAAAAGAGGAAAAGAAAAAGGAAAAG
GCGGAAGCCAAAGCAGAGAAAAAGCGTTTGAAGGAGGGTGGGGAGAAATCTGCCGAAACGCAAAAATCCCGCCTTTTTGT
GTTGGATTTTGACGGCGATTTGTATGCACACGCCGTAGAATCCTTGCGTCATGAGATTACGGCGGTGCTTTTGATTGCCA
AGCCTGAAGATGAGGTTCTGCTCAGATTGGAAAGTCCGGGCGGCGTGGTTCACGGTTACGGTTTGGCGGCTTCGCAGCTT
AGGCGTTTGCGCGAACGCAATATTCCGCTGACCGTCGCCGTCGATAAGGTGGCGGCGAGCGGCGGTTATATGATGGCGTG
TGTGGCGGATAAAATTGCTTCCGCTCCGTTTGCGATTGTCGGTTCGGTGGGTGTTGTAGCGGAAGTACCGAATATCCACC
GCCTGTTGAAAAAACATGATATTGATGTGGATGTGATGACGGCGGGCGAATTTAAGCGCACGGTTACTTTTATGGGTGAA
AATACGGAAAAGGGCAAACAGAAATTCCGACAGGAACTGGAGGAAACGCATCAGTTGTTCAAGCAGTTTGTCAGCGAGAA
CCGCCCTCAATTGGATATTGAGGAAGTGGCAACGGGCGAGCATTGGTTCGGTCGGCAGGCGTTGGCGTTGAACTTGATTG
ACGAGATTTCGACCAGTGATGATTTGTTGTTGAAAGCGTTTGAAAACAAACAGGTTATCGAAGTGAAATATCAGGAGAAG
CAAAGCCTGATCCAGCGCATTGGTTTGCAGGCGGAAGCTTCTGTTGAAAAGTTGTTTGCCAAACTTGTCAACCGGCGGGC
GGATGTGATGTAG

Upstream 100 bases:

>100_bases
TGAAAATGACAATGCCGCTCCAAGCGGTTATTTTTTTATCTGTCGGACGGTGATGGACAATATTGACATGTTCATGCCTG
AACAAGAGGAAATCCAATCA

Downstream 100 bases:

>100_bases
TTTGCCGAACGGATGGAAATGCCGTCTGAAGCGTGTTCAGACGGCATTTTTCAAGTTCCGGCTTTGATGTTCCGTTCCAA
TCCCCCTATCCGTTGTCCGA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVLTDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEK
AEAKAEKKRLKEGGEKSAETQKSRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
RRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFAIVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGE
NTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEK
QSLIQRIGLQAEASVEKLFAKLVNRRADVM

Sequences:

>Translated_350_residues
MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVLTDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEK
AEAKAEKKRLKEGGEKSAETQKSRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
RRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFAIVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGE
NTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEK
QSLIQRIGLQAEASVEKLFAKLVNRRADVM
>Mature_350_residues
MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVLTDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEK
AEAKAEKKRLKEGGEKSAETQKSRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
RRLRERNIPLTVAVDKVAASGGYMMACVADKIASAPFAIVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGE
NTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEVATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEK
QSLIQRIGLQAEASVEKLFAKLVNRRADVM

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=344, Percent_Identity=54.3604651162791, Blast_Score=342, Evalue=2e-95,
Organism=Escherichia coli, GI1788064, Length=177, Percent_Identity=25.9887005649718, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.-.-

Molecular weight: Translated: 39345; Mature: 39345

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVLTDFSENYKKQRQSFEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHH
FFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSAETQKSRLFVLDFDGDLYAHAVE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCEEEEEECCCCHHHHHHH
SLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAAS
HHHHHHHEEEEEECCCCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCEEEEEHHHHCC
GGYMMACVADKIASAPFAIVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGE
CCEEEHHHHHHHCCCCHHHHCCCHHHHCCHHHHHHHHHCCCCEEEEECCCHHHEEEEECC
NTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEVATGEHWFGRQALALNLIDEISTSD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHCCHHHHHHHHHHCCCCC
DLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRADVM
HHHHHHHCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVLTDFSENYKKQRQSFEA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHH
FFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSAETQKSRLFVLDFDGDLYAHAVE
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCEEEEEECCCCHHHHHHH
SLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAAS
HHHHHHHEEEEEECCCCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCEEEEEHHHHCC
GGYMMACVADKIASAPFAIVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGE
CCEEEHHHHHHHCCCCHHHHCCCHHHHCCHHHHHHHHHCCCCEEEEECCCHHHEEEEECC
NTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEVATGEHWFGRQALALNLIDEISTSD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHCCHHHHHHHHHHCCCCC
DLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEASVEKLFAKLVNRRADVM
HHHHHHHCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]