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The map label for this gene is 161870381

Identifier: 161870381

GI number: 161870381

Start: 1449742

End: 1450554

Strand: Reverse

Name: 161870381

Synonym: NMCC_1427

Alternate gene names: NA

Gene position: 1450554-1449742 (Counterclockwise)

Preceding gene: 161870382

Following gene: 161870379

Centisome position: 67.36

GC content: 54.61

Gene sequence:

>813_bases
ATGTCGGTTGGGCATTATGAGAATTTTCCCGTCGGTTCGCTGATTTTGCCGCGCAGGTTGAGGAAGCCGGTTCACGCGGT
GTACGCGTTTGCACGGACGGCGGACGATATGGCGGACGAGGGCAGTATGCCGTCTGAAGCCAGGTTGGCGGGGTTGGAGG
GTTTGCAGCGCGAGTTGGACGTGTTGGCATCGGGCGGCCGGTCGGCGCATCCTTTGATTGCACGATTGGATGCCGAGGCG
GTTGTGCCGTTCGGTTTGGATTTGCAGCCGTTTTATGATTTGCTTTCTGCATTTTCTCAGGATGTGGTTAAAACAAGGTA
TGGAAATTTCGGCGAGCTGGCCGATTATTGTCGGCGTTCCGCCAACCCTGTCGGACGCATTATGCTGGCTTTGTACGGGA
AAACGGATGCGGTGTGCGTGGCGCAAAGCGACGGTATCTGTACGGCTTTGCAACTGGTGAATTTTTGGCAGGATGTGGCT
GTGGATTGGCAAAAGGGCAGGGTTTATATCCCGCAGGACGATTTGTTGAAATTCGGTGTTTCCGAAGGACAGATTGCGGA
GGGTAGGGCGGATGCGGCGTTTCAGCGGCTGATGGCGTATGAGTGCCGGCGCGCATTCCGTATGCTGAAGGCGGGTTCGC
CTTTGGCGCGCGAATTGAAAGGGCGTATCGGTTTGGAACTCCGTATGATTGTGTTGGGGGCGCAGTTGATTTTGCAGAAA
CTGGACGCGTGCCGATACGATGTGTTTGCACAACGCCCCGTTTTGGATAAGAAGGATTGGTTGATTATGCTGAAAAAGGC
GTTGTGGAAATGA

Upstream 100 bases:

>100_bases
ATCACCACCACTGATTGCCGGCAGCTTGGAGGTATCTGATGCCGTCTGAAAAGGGTTTGTTCCGTTTCAGACGGCATTTT
GTTTGATGGATGGAGAAGGT

Downstream 100 bases:

>100_bases
TTGGGGGAAAATGAATGCCGTCTGAAAGGGGTTGTTCCGCTTCAGACGGCATTTTGCAGGCGGTTGGTATGGTCAGGCGA
TTTCATGCGGGTTCAACCTG

Product: phytoene synthase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEA
VVPFGLDLQPFYDLLSAFSQDVVKTRYGNFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
VDWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQK
LDACRYDVFAQRPVLDKKDWLIMLKKALWK

Sequences:

>Translated_270_residues
MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEA
VVPFGLDLQPFYDLLSAFSQDVVKTRYGNFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
VDWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQK
LDACRYDVFAQRPVLDKKDWLIMLKKALWK
>Mature_269_residues
SVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEAV
VPFGLDLQPFYDLLSAFSQDVVKTRYGNFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVAV
DWQKGRVYIPQDDLLKFGVSEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQKL
DACRYDVFAQRPVLDKKDWLIMLKKALWK

Specific function: Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017827
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: NA

Molecular weight: Translated: 30124; Mature: 29993

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLQRELD
CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDVVKTRYGNFGELADYCRRS
HHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
ANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVAVDWQKGRVYIPQDDLLKFGV
CCHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHCC
SEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
LDACRYDVFAQRPVLDKKDWLIMLKKALWK
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMPSEARLAGLEGLQRELD
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDVVKTRYGNFGELADYCRRS
HHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
ANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVAVDWQKGRVYIPQDDLLKFGV
CCHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHCC
SEGQIAEGRADAAFQRLMAYECRRAFRMLKAGSPLARELKGRIGLELRMIVLGAQLILQK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
LDACRYDVFAQRPVLDKKDWLIMLKKALWK
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]