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The map label for this gene is rbgA [H]

Identifier: 161869681

GI number: 161869681

Start: 709582

End: 710523

Strand: Direct

Name: rbgA [H]

Synonym: NMCC_0699

Alternate gene names: 161869681

Gene position: 709582-710523 (Clockwise)

Preceding gene: 161869680

Following gene: 161869682

Centisome position: 32.95

GC content: 55.2

Gene sequence:

>942_bases
ATGGCAATCCAATGGTTTCCCGGCCATATGAACAAAGCGAAAAAAGCCATCGCCGAGCGCGCCAAAAGCGTAGACATGGT
GATTGAAATGCTGGATGCGCGAATGCCCGCCTCCAGCGAAAACCCCCTGCTTGCCCAACTTTCCAAAGGCAAACCTAAAC
TTAAAATCCTCAACAAACAAGATCTTGCCGACCCCGAGCGCACCAAAATCTGGCTCGAACACTATAACAGCCGCCCCGAC
ACCTGCGCCATCGCCCTCGATTCCTCCGAAACAGGCGCACACGGCAAAATTACCCAAGCCTGTCGTGCCATGATTCCCCA
CCGCCAAGGCATAGATAAACCCCTGCGCGTCCTCATCTGCGGCATCCCCAACGTTGGCAAGTCCACCCTCATCAACGGCA
TGATAGGCAAAAAATCCGCCAAAACCGGCAACGAACCCGGCATCACCAAAGCCGAACAACGCCTCTTCCTCGCCGATGAC
TTCTGGCTCTACGACACCCCCGGAATGCTGTGGCCGAAAATCATCGTCGAAGAAGGCGGCTACAACCTTGCCGCCGGCGG
CGCAGTCGGACGCAACGCGTTGGACGAAGAAGAAGTCGCCCTCGAACTTTTAGACTACCTCCGCCGCCACTACCTCCCTA
TGTTGCAAGAACGCTACCAAGCCGACAAAGACCCCAGCAGCCACTGGGACGAAAACGTTTGGCTCGAATGGATAGCCAAA
AAACGCGGCGCAGTCCTCAGCGGCGGACGGATCAACTACCAAAAAGCCGCCGAAAACATCCTCACCGACTTCCGTGAAGG
CAAAATCGGCAGAATCACCCTCGAAACGCCGAACCAATGGGAAACTTGGCTCAAAAAAGCCCGTCAGAAAGAAGCCGAAC
TCAAAGCCATACGCGAAGCCAGAAAAGCAGAGCGTAAAGGGCAGAAGCCTTCGGAAGCATAA

Upstream 100 bases:

>100_bases
AAAACCTGCCGAGCCGCTAATCCCGTTGAACGATGATGCCGTCTGAAACCCGATTTTCTGTTTCAGACGGCATTTCAAAT
ATTGAGAAGAAAGGAAAGAC

Downstream 100 bases:

>100_bases
AGAATGCCGTCTGAAAAATATTTTTCAGGCAGCTTCTCTCTACTCCAACCGATTTCAGACGGCATATCCAAACCCATGCC
GTTTCAGCACGGATACCCGT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQLSKGKPKLKILNKQDLADPERTKIWLEHYNSRPD
TCAIALDSSETGAHGKITQACRAMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
FWLYDTPGMLWPKIIVEEGGYNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAK
KRGAVLSGGRINYQKAAENILTDFREGKIGRITLETPNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA

Sequences:

>Translated_313_residues
MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQLSKGKPKLKILNKQDLADPERTKIWLEHYNSRPD
TCAIALDSSETGAHGKITQACRAMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
FWLYDTPGMLWPKIIVEEGGYNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAK
KRGAVLSGGRINYQKAAENILTDFREGKIGRITLETPNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA
>Mature_312_residues
AIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQLSKGKPKLKILNKQDLADPERTKIWLEHYNSRPDT
CAIALDSSETGAHGKITQACRAMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADDF
WLYDTPGMLWPKIIVEEGGYNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAKK
RGAVLSGGRINYQKAAENILTDFREGKIGRITLETPNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=292, Percent_Identity=32.1917808219178, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI7019419, Length=255, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI296317324, Length=279, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI9506611, Length=279, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193211047, Length=235, Percent_Identity=28.0851063829787, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17534827, Length=281, Percent_Identity=28.4697508896797, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71990926, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32563985, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32563983, Length=233, Percent_Identity=27.8969957081545, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320842, Length=294, Percent_Identity=26.8707482993197, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324381, Length=252, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6323744, Length=224, Percent_Identity=29.0178571428571, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85815858, Length=307, Percent_Identity=29.9674267100977, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28572990, Length=286, Percent_Identity=25.8741258741259, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI19922460, Length=308, Percent_Identity=25.974025974026, Blast_Score=78, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35260; Mature: 35129

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQLSKGKPKLKILNKQ
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCC
DLADPERTKIWLEHYNSRPDTCAIALDSSETGAHGKITQACRAMIPHRQGIDKPLRVLIC
CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE
GIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADDFWLYDTPGMLWPKIIVEEGG
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCEEEEECCCEEECCCCCCCCCCEEECCC
YNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAK
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
KRGAVLSGGRINYQKAAENILTDFREGKIGRITLETPNQWETWLKKARQKEAELKAIREA
HCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
RKAERKGQKPSEA
HHHHHCCCCCCCC
>Mature Secondary Structure 
AIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLLAQLSKGKPKLKILNKQ
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCC
DLADPERTKIWLEHYNSRPDTCAIALDSSETGAHGKITQACRAMIPHRQGIDKPLRVLIC
CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE
GIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADDFWLYDTPGMLWPKIIVEEGG
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCEEEEECCCEEECCCCCCCCCCEEECCC
YNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQERYQADKDPSSHWDENVWLEWIAK
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
KRGAVLSGGRINYQKAAENILTDFREGKIGRITLETPNQWETWLKKARQKEAELKAIREA
HCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
RKAERKGQKPSEA
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]