Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 161869539

GI number: 161869539

Start: 575714

End: 577567

Strand: Direct

Name: secD [H]

Synonym: NMCC_0553

Alternate gene names: 161869539

Gene position: 575714-577567 (Clockwise)

Preceding gene: 161869538

Following gene: 161869540

Centisome position: 26.73

GC content: 53.45

Gene sequence:

>1854_bases
ATGAACCGTTATCCTTTATGGAAATATCTGCTGATTGTGTTCACGATTGCGGTTGCCGCAGTGTATTCGCTGCCCAACCT
ATTCGGCGAAACACCCGCCGTGCAGGTATCGACCAACCGACAAGCCATCATCATCAACGAACAGACTCAATTCAAAGTGG
ATGCCGCGCTGAAAAACGCAGGTATTCAGACCGACGGGATGTTTGTTGTGGACAATTCACTGAAAGTGCGTTTCAAAGAC
ACAGAAACGCAGCTTAAAGCGCGCGACGTCATCGAAAACACTTTGGGCGAAGGGTATATTACCGCGCTCAACCTGTTGGC
GGACAGCCCCGAATGGATGGCGAAAATCAAAGCCAATCCGATGTTTTTGGGTTTGGACTTGCGCGGCGGCGTGCATTTCA
CCATGCAGGTCGATATGAAAGCGGCGATGCAGAAAACGTTTGAACGTTATTCGGGCGACATCCGCCGCGAACTGCGCCGC
GAAAAAATCCGCAGCGGCACGGTGCGTCAGGCTGGAAACAGCCTGACCGTCCCTTTGCAGGATGCAGGTGATGTGCAAAA
GGCTCTGCCGCAGTTGCGCAAGCTGTTTCCTGAAGCAACGCTGAATTCAGACGGCAGCAATATCGTCTTGACGCTTTCGG
AAGAGGCGGTCAATAAAGTGCGTTCCGATGCGGTCAAACAGAACATCACTACCCTGCACAACCGTGTGAACGAGTTGGGC
GTGGCCGAGCCCGTCATCCAGCAGTCCGGTGCAGACCGTATCGTCGTGCAGCTTCCGGGCGTTCAGGATACTGCCAAGGC
AAAAGACATCATCGGCCGTACCGCGACTTTGGAATTGCGTATGGTGGAGGACGATCCTGCCAAGTTGCGCGAGGCATTGG
AAGGCAACGTGCCGAGCGGTTATGAGCTGCTTTCAAGCGGCGGAGATCGTCCCGAAATTCTGCTGATTAGCAAACAGGTC
GAGCTGACGGGCGACAACATCAACGATGCGCAACCGAGTTTCGACCAAATGGGCGCACCTGCCGTCAGTCTGAGCTTGGA
CAGCGCGGGCGGCAGCATTTTCGGCGAACTGACTGCCGCAAATGTCGGCAAACGCATGGCGATGGTTTTGATCGACCAAG
GAAAATCCGAGGTTGTAACCGCGCCGGTTATCCGTACTGCCATTACAGGCGGACGCGTGGAAATTTCCGGAAGCATGACG
ACAGCCGAAGCCAATGATACGTCTTTGCTGTTGCGTGCCGGTTCTCTTGCCGCACCGATGCAGATTGTCGAAGAACGTAC
CATCGGTCCGTCTTTGGGTAAGGAGAACATCGAAAAAGGCTTCCATTCGACTTTATGGGGTTTTGCCATCGTTGCTGCAT
TCATGGTGGTTTACTATCGTCTGATGGGTTTCTTTTCTACCATTGCATTGAGTGCCAACATACTGTTCCTAATCGGTATT
TTGTCTGCCATGCAGGCAACGTTGACGTTACCGGGTATGGCCGCGCTGGCGTTGACTTTGGGTATGGCAATCGACTCCAA
CGTCTTGATTAACGAACGTATCCGCGAAGAATTGCGTGTCGGCGTGCCGCCGCAGCAGGCAATCAATCTCGGTTTCCAAC
ACGCATGGGCGACCATTGTCGATTCCAACCTGACTTCGCTGATTGCCGGTATCGCGCTTTTGGTATTCGGTTCCGGCCCG
GTACGCGGTTTTGCGGTCGTACACTGTTTGGGTATTCTGACTTCGATGTATTCGTCCGTCGTCGTATTCCGTGCGTTGGT
CAATCTGTGGTACGGACGCAGACGCAAATTGCAGAATATTTCCATCGGTGCGGTATGGAAACCTGAAGCCGAAACTGCGG
CAGGTAAGGAGTAA

Upstream 100 bases:

>100_bases
CTTCCGGTCTTGCCTGGCTGGGAAGGGTTTTTGCCTCTTCTGAAATAGCCCGATTCCGACACCACCGAAAGGGTGGGGTT
CCAACCATTAAGGAACAATG

Downstream 100 bases:

>100_bases
GCTATGGAACTCTTTAAAATCAAACGCGATATTCCGTTTATGAGCTACGGCAAACTGACGACCTTCATTTCGTTGGTTAC
GTTTATCGCTGCCGTGTTCT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 617

Protein sequence:

>617_residues
MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNAGIQTDGMFVVDNSLKVRFKD
TETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNELG
VAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQV
ELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMT
TAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIGI
LSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGP
VRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE

Sequences:

>Translated_617_residues
MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNAGIQTDGMFVVDNSLKVRFKD
TETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNELG
VAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQV
ELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMT
TAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIGI
LSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGP
VRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE
>Mature_617_residues
MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNAGIQTDGMFVVDNSLKVRFKD
TETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNELG
VAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQV
ELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMT
TAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIGI
LSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGP
VRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=613, Percent_Identity=44.0456769983687, Blast_Score=498, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66767; Mature: 66767

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEHHHHHHHC
GIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANP
CCCCCCEEEEECCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHEECCCC
MFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVPLQ
EEEEEEECCCEEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCEEEEECC
DAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNELG
CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSG
CCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCCCCC
YELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAA
HHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCEEEHHHHH
NVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMTTAEANDTSLLLRAGSLAAPM
HHCHHEEEEEEECCCCCEEEHHHHHHHCCCCEEEECCCEEECCCCCCEEEEECCCCHHHH
QIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIGI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRVGVPPQQAINLGFQHAWATIV
HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHH
DSNLTSLIAGIALLVFGSGPVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SIGAVWKPEAETAAGKE
CEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEHHHHHHHC
GIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANP
CCCCCCEEEEECCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHEECCCC
MFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKIRSGTVRQAGNSLTVPLQ
EEEEEEECCCEEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCEEEEECC
DAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNELG
CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSG
CCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCEEEEEEEEECCCHHHHHHHHCCCCCCC
YELLSSGGDRPEILLISKQVELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAA
HHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCEEEHHHHH
NVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSMTTAEANDTSLLLRAGSLAAPM
HHCHHEEEEEEECCCCCEEEHHHHHHHCCCCEEEECCCEEECCCCCCEEEEECCCCHHHH
QIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIGI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRVGVPPQQAINLGFQHAWATIV
HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHH
DSNLTSLIAGIALLVFGSGPVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SIGAVWKPEAETAAGKE
CEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]