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The map label for this gene is secF [H]

Identifier: 161869540

GI number: 161869540

Start: 577571

End: 578506

Strand: Direct

Name: secF [H]

Synonym: NMCC_0554

Alternate gene names: 161869540

Gene position: 577571-578506 (Clockwise)

Preceding gene: 161869539

Following gene: 161869541

Centisome position: 26.82

GC content: 49.25

Gene sequence:

>936_bases
ATGGAACTCTTTAAAATCAAACGCGATATTCCGTTTATGAGCTACGGCAAACTGACGACCTTCATTTCGTTGGTTACGTT
TATCGCTGCCGTGTTCTTCTTGGTGACCAAAGGCCTGAATTTCTCTGTCGAATTTACCGGCGGTACGGTAATGGAAGTCC
AATATCAGCAGGGTGCGGATGTCAATAAGATGCGCGAACGCCTCGATACGCTGAAAATAGGTGATGTACAGGTTCAGGCA
TTGGGTACGAACAAACACATCATGATCCGCCTGCCGAACAAAGAAGGTGTTACTTCCGCACAGTTGTCCAATCAGGTTAT
GGATTTGCTGAAAAAAGACAGTCCCGACGTTACCTTGCGCCAAGTCGAATTTATCGGCCCGCAAGTCGGTGAGGAATTGG
TAAGTAATGGATTGATGGCTTTAGGTTTTGTCGTTATCGGCATCATTATTTACCTGTCGATGCGTTTTGAATGGCGTTTT
GCCGTATCTGCCATTATCGCCAATATGCACGACATCGTGATTATTCTCGGCTGCTTTGCCTTCTTCCAATGGGAATTTTC
GCTGACCGTCTTGGCGGGTATCCTTGCCGTATTGGGCTATTCTGTGAACGAATCCGTCGTCGTCTTCGACCGTATCCGTG
AAAACTTCCGCAAGCCGGCGATGCGCGGACATGCCGTGCCGGAAGTCATCGACAACGCGATTACCGCAACGATGAGCCGC
ACCATCATTACCCACGGTTCGACCGAGGCGATGGTCGTATCCATGCTGGTGTTCGGCGGTACGGCCTTGCACGGCTTTTC
TATGGCGTTGACCATCGGCATCGTGTTCGGCATTTATTCTTCCGTATTGGTTGCCAGCCCGCTTCTGCTAATGTTCGGTT
TGAGCCGCGACAATATCGGTAAAGAACCGAAGAAGAAAGAAGAAATCGTGGTTTGA

Upstream 100 bases:

>100_bases
GGTCAATCTGTGGTACGGACGCAGACGCAAATTGCAGAATATTTCCATCGGTGCGGTATGGAAACCTGAAGCCGAAACTG
CGGCAGGTAAGGAGTAAGCT

Downstream 100 bases:

>100_bases
AGCGCATATGCCGTCTGAACATTGCCGTCTCAAGCAGACAATGCTTCAGACGGCATTTTTAACGGTTACTTCCACGGTCT
TAAAATATTGTGCAGAAATG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQA
LGTNKHIMIRLPNKEGVTSAQLSNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATMSR
TIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV

Sequences:

>Translated_311_residues
MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQA
LGTNKHIMIRLPNKEGVTSAQLSNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATMSR
TIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV
>Mature_311_residues
MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQA
LGTNKHIMIRLPNKEGVTSAQLSNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATMSR
TIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=298, Percent_Identity=37.5838926174497, Blast_Score=221, Evalue=6e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34371; Mature: 34371

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCC
VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQLSNQVMDLLKKDSPDVTLR
HHHHHHHHHHEEECCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEH
QVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGCFA
HHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATMSR
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHH
TIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDNIG
HHEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KEPKKKEEIVV
CCCCCCCCCCC
>Mature Secondary Structure
MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCC
VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQLSNQVMDLLKKDSPDVTLR
HHHHHHHHHHEEECCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEH
QVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGCFA
HHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATMSR
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHH
TIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDNIG
HHEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KEPKKKEEIVV
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]