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The map label for this gene is rimM [H]

Identifier: 161869523

GI number: 161869523

Start: 561516

End: 562025

Strand: Reverse

Name: rimM [H]

Synonym: NMCC_0537

Alternate gene names: 161869523

Gene position: 562025-561516 (Counterclockwise)

Preceding gene: 161869524

Following gene: 161869522

Centisome position: 26.1

GC content: 50.39

Gene sequence:

>510_bases
ATGACAGACACTCAAAACCGGGTAGCCATGGGCTACATCAAAGGCGTATTCGGCATAAAAGGCTGGTTGAAAATTGCCGC
CAACACCGAATATTCCGACAGCCTTTTGGACTACCCCGAGTGGCATTTGGTCAAGGACGGCAAAACCATCAGCGTTACCC
TTGAAGCCGGAAAAGTCGTCAACAGCGAACTCCAAGTCAAATTCGAAGGCATAAACGACCGCGACTTGGCATTCTCATTG
CACGGTTACACCATCGAAATACCCCGTGAAGCATTCGCCCCGACAGAAGAAGACGAATACTACTGGGCAGACCTGGTCGG
CATGACCGTCGTCAACAAAGACCATACCGTTTTAGGCAAGGTAAGCAACCTGATGGAAACCGGCGCAAACGACGTATTGA
TGATTGACGGAGAACACGGGCAGATTCTGATTCCGTTCGTTTCCCAATATATCGAAACCGTCGATACCGGCAGCAAGACC
ATTACTGCCGACTGGGGTTTGGACTACTGA

Upstream 100 bases:

>100_bases
AGACCGCCTGAACCACTGGATTGCACAAGGCGCGCAAGTCAGCGACTCCGTTGCAAAACTGATTAAAGAACAAAAAGCCG
CCTAATCCACATTTGCCGCC

Downstream 100 bases:

>100_bases
TGCTTATCCAGGCAGTTACCATTTTCCCCGAAATGTTCGACAGCATTACCCGCTACGGCGTAACGGGACGCGCGAACAGA
CAGGGAATCTGGCAGTTTGA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVVNSELQVKFEGINDRDLAFSL
HGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKT
ITADWGLDY

Sequences:

>Translated_169_residues
MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVVNSELQVKFEGINDRDLAFSL
HGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKT
ITADWGLDY
>Mature_168_residues
TDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVVNSELQVKFEGINDRDLAFSLH
GYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKTI
TADWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=165, Percent_Identity=36.3636363636364, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18856; Mature: 18725

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV
CCCCCCEEEHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCEEEEECCCEEEEEEECCEEE
NSELQVKFEGINDRDLAFSLHGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDHTVLGK
CCEEEEEECCCCCCCEEEEECCEEEEECHHHCCCCCCCCEEEEEEEEEEEECCCCHHHHH
VSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKTITADWGLDY
HHHHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
TDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLVKDGKTISVTLEAGKVV
CCCCCEEEHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCEEEEECCCEEEEEEECCEEE
NSELQVKFEGINDRDLAFSLHGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDHTVLGK
CCEEEEEECCCCCCCEEEEECCEEEEECHHHCCCCCCCCEEEEEEEEEEEECCCCHHHHH
VSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKTITADWGLDY
HHHHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA