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The map label for this gene is ybeY [C]

Identifier: 161869467

GI number: 161869467

Start: 496660

End: 497295

Strand: Reverse

Name: ybeY [C]

Synonym: NMCC_0479

Alternate gene names: 161869467

Gene position: 497295-496660 (Counterclockwise)

Preceding gene: 161869469

Following gene: 161869465

Centisome position: 23.09

GC content: 50.79

Gene sequence:

>636_bases
ATGTTCAATGCGTTCAAAGAATGGAAACGGCGTAAAGTCTATCATATTTTGAACGTTTCTTCAGACGGTATGCCGTGGTC
TATGTTATATTTACGCCCACAAAACACGAAACCCGCCACAATGAAACGCGCCAAAAAATACCCTTTCTTAACGTTGCAGC
GGCAACGTTTCCATTTGAACTTTGAAAACGCCTCTTCCGCCGCCGGCATCCCCGCCGAACGTGATTTCTACCGCTGGGCA
TGGTCTGCCTTGAAAAATGAATACCGCCGCGCCGACATCAGCCTGATTCTTCTGGACGAAGAAGAAGCCCGAGCCTACAA
CCGCGACTACCGCGGCAAAGATTACGCCACCAATGTATTGAGTTTCGCGCTCAACGAAGGCGAAACCCTGCCCGGTCAAG
TTTCGGAAAAACTGTACGGCGATTTGATTATCTGCCCGCAAGTCGTTTTAAAAGAAGCCGCCGAACAAGGCAAAACGCCC
GAACGGCATTTTGCCCACTTAACCATACACGGCGTTTTGCACCTGATGGGCTACGACCACATCGAAGACGATGAAGCCGA
AATAATGGAAGCCGAAGAAATCCGCCTGATGCGGGCGGCAGGCTTCCCCAACCCCTACCAAGAGGACGGACATTAA

Upstream 100 bases:

>100_bases
GCAATCGGGATACAGAGCCTTCAGACGGCCTTGGATATGCTTTGCCTGCCACATAGCAAGCAGGCTTTCGCGGCTGGCGA
TGACGAGTTTTTTCGGGTTC

Downstream 100 bases:

>100_bases
AATGGACGGCGCACAACCGAAAACGAATTTTTTTGAACGCCTGATTGCCCGACTCGCCCGCGAACCCGATTCCGCCGAAG
ACGTATTAAACCTGCTTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFNAFKEWKRRKVYHILNVSSDGMPWSMLYLRPQNTKPATMKRAKKYPFLTLQRQRFHLNFENASSAAGIPAERDFYRWA
WSALKNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGETLPGQVSEKLYGDLIICPQVVLKEAAEQGKTP
ERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQEDGH

Sequences:

>Translated_211_residues
MFNAFKEWKRRKVYHILNVSSDGMPWSMLYLRPQNTKPATMKRAKKYPFLTLQRQRFHLNFENASSAAGIPAERDFYRWA
WSALKNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGETLPGQVSEKLYGDLIICPQVVLKEAAEQGKTP
ERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQEDGH
>Mature_211_residues
MFNAFKEWKRRKVYHILNVSSDGMPWSMLYLRPQNTKPATMKRAKKYPFLTLQRQRFHLNFENASSAAGIPAERDFYRWA
WSALKNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGETLPGQVSEKLYGDLIICPQVVLKEAAEQGKTP
ERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQEDGH

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=139, Percent_Identity=48.2014388489209, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 24596; Mature: 24596

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNAFKEWKRRKVYHILNVSSDGMPWSMLYLRPQNTKPATMKRAKKYPFLTLQRQRFHLN
CCCHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHCCCEEEEEEEEEEEE
FENASSAAGIPAERDFYRWAWSALKNEYRRADISLILLDEEEARAYNRDYRGKDYATNVL
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCHHHHHHH
SFALNEGETLPGQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDH
HHHHCCCCCCCHHHHHHHHCCEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
IEDDEAEIMEAEEIRLMRAAGFPNPYQEDGH
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFNAFKEWKRRKVYHILNVSSDGMPWSMLYLRPQNTKPATMKRAKKYPFLTLQRQRFHLN
CCCHHHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHCCCEEEEEEEEEEEE
FENASSAAGIPAERDFYRWAWSALKNEYRRADISLILLDEEEARAYNRDYRGKDYATNVL
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCHHHHHHH
SFALNEGETLPGQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDH
HHHHCCCCCCCHHHHHHHHCCEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
IEDDEAEIMEAEEIRLMRAAGFPNPYQEDGH
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA