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The map label for this gene is pglC [H]

Identifier: 161869397

GI number: 161869397

Start: 415279

End: 416553

Strand: Reverse

Name: pglC [H]

Synonym: NMCC_0404

Alternate gene names: 161869397

Gene position: 416553-415279 (Counterclockwise)

Preceding gene: 161869399

Following gene: 161869396

Centisome position: 19.34

GC content: 55.37

Gene sequence:

>1275_bases
TTGACAACACCTGCGGCGCGCGCCCGATTCTTCGGAACACGCCCCCTTCAGACGGCAGAAATGAGGAAATGCCGTCTGAA
AACCGACGGACAAACCATCATGCTGAACACCGCCCTTTCCCCGTGGCCCTGCTTCACCCAAGAAGAAGCCGATGCCGTTT
CCAAAGTCCTGCTGTCCAACAAAGTCAACTACTGGACGGGCAACGAATGCCGCGAATTTGAAAAAGAATTTGCCGCCTTT
GCCGGCACGCGGTACGCCGTCGCCCTTTCCAACGGCACGCTGGCACTCGATGTCGCGCTCAAAGCAATCGGCATAGGCGC
GGGCAACGATGTGATTGTTACCTCGCGCACTTTCTTGGCTTCCGCTTCCTGCATTGTGAACGCGGGCGCAAATCCCGTGT
TTGCTGATGTGGATTTGAACAGCCAAAACATCAGCGCGGAAACCGTCAAAGCCGCGCTGACCCCGAATACCAAAGCGATT
ATCGTGGTTCACCTTGCCGGTATGCCTGCCGAAATGGACGGCATTATGGCTTTGGCAAAAGAACATGATTTGTGGGTGAT
TGAAGACTGCGCCCAAGCGCACGGCGCAAAATACAAAGGCAAATCCGTCGGCTCTATCGGCCACGTTGGAGCTTGGTCGT
TCTGCCAAGACAAAATCATGACCACCGGCGGCGAAGGCGGCATGGTCACCACCAACGACAAAGAGCTGTGGAGCAAAATG
TGGTCGTACAAAGACCACGGCAAGAGCTATGATGCCGTGTACCACCGCGAACACGCCCCCGGCTTCCGCTGGCTGCACGA
AAGATTCGGCACAAACTGGCGCATGATGGAAATGCAGGCTGTCATCGGCCGCATCCAGCTCAAACGTCTGCCCGAATGGA
CGGTGCGCCGCCAAGAAAACGCCGCCAAGCTGGCGGAAAGCTTGGGCAAATTCAAAAGCATCCGCCTGATTGAAGTCGCC
GACTACATCGAACACGCGCAATATAAGTTCTACGCCTTCGTCAAACCCGAACACCTCAAAGACGGCTGGACGCGCGACCG
CATCGTGAACGAACTGAACGTGCGCAAAGTCCCCTGCTATCAAGGCAGCTGCTCCGAAGTCTATTTGGAAAAAGCCTTCG
ACAACACGCCTTGGCGTCCGAAAGAGCGTTTGAAAAACGCTGTCGAGTTGGGCAACACCAGCCTGATGTTCTTGGTACAC
CCGACGCTGACCGACGACGAAATCGCGTTCTGCAAAAAACACATCGAAGCCGTATTGGCAGAAGCCACACAATAA

Upstream 100 bases:

>100_bases
AAGGCGACGAAGCCGCAGACAGTACAAATAGTACGGCAAGGCGAGGCAACGCCGTACTGGTTTAAATTTAATCCACTATA
CACCCCCGTACAGACCGATT

Downstream 100 bases:

>100_bases
CCCTTCAGACGGCATATGCCGCCTGAAAGCACATACCGCCCCACGATATGACTCTGGAAACCCTGATCGCCCTGCCGCGC
AACATCAAGAAAATCTGTTT

Product: pilin glycosylation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTTPAARARFFGTRPLQTAEMRKCRLKTDGQTIMLNTALSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEFAAF
AGTRYAVALSNGTLALDVALKAIGIGAGNDVIVTSRTFLASASCIVNAGANPVFADVDLNSQNISAETVKAALTPNTKAI
IVVHLAGMPAEMDGIMALAKEHDLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKELWSKM
WSYKDHGKSYDAVYHREHAPGFRWLHERFGTNWRMMEMQAVIGRIQLKRLPEWTVRRQENAAKLAESLGKFKSIRLIEVA
DYIEHAQYKFYAFVKPEHLKDGWTRDRIVNELNVRKVPCYQGSCSEVYLEKAFDNTPWRPKERLKNAVELGNTSLMFLVH
PTLTDDEIAFCKKHIEAVLAEATQ

Sequences:

>Translated_424_residues
MTTPAARARFFGTRPLQTAEMRKCRLKTDGQTIMLNTALSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEFAAF
AGTRYAVALSNGTLALDVALKAIGIGAGNDVIVTSRTFLASASCIVNAGANPVFADVDLNSQNISAETVKAALTPNTKAI
IVVHLAGMPAEMDGIMALAKEHDLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKELWSKM
WSYKDHGKSYDAVYHREHAPGFRWLHERFGTNWRMMEMQAVIGRIQLKRLPEWTVRRQENAAKLAESLGKFKSIRLIEVA
DYIEHAQYKFYAFVKPEHLKDGWTRDRIVNELNVRKVPCYQGSCSEVYLEKAFDNTPWRPKERLKNAVELGNTSLMFLVH
PTLTDDEIAFCKKHIEAVLAEATQ
>Mature_423_residues
TTPAARARFFGTRPLQTAEMRKCRLKTDGQTIMLNTALSPWPCFTQEEADAVSKVLLSNKVNYWTGNECREFEKEFAAFA
GTRYAVALSNGTLALDVALKAIGIGAGNDVIVTSRTFLASASCIVNAGANPVFADVDLNSQNISAETVKAALTPNTKAII
VVHLAGMPAEMDGIMALAKEHDLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKELWSKMW
SYKDHGKSYDAVYHREHAPGFRWLHERFGTNWRMMEMQAVIGRIQLKRLPEWTVRRQENAAKLAESLGKFKSIRLIEVAD
YIEHAQYKFYAFVKPEHLKDGWTRDRIVNELNVRKVPCYQGSCSEVYLEKAFDNTPWRPKERLKNAVELGNTSLMFLVHP
TLTDDEIAFCKKHIEAVLAEATQ

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=260, Percent_Identity=35.3846153846154, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI2367285, Length=268, Percent_Identity=33.955223880597, Blast_Score=141, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 47391; Mature: 47259

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPAARARFFGTRPLQTAEMRKCRLKTDGQTIMLNTALSPWPCFTQEEADAVSKVLLSN
CCCCHHHHHHCCCCCCCHHHHHHHEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
KVNYWTGNECREFEKEFAAFAGTRYAVALSNGTLALDVALKAIGIGAGNDVIVTSRTFLA
CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHCCCCCCCEEEECHHHHH
SASCIVNAGANPVFADVDLNSQNISAETVKAALTPNTKAIIVVHLAGMPAEMDGIMALAK
CCCEEEECCCCCEEEEEECCCCCCCHHHEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH
EHDLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKELWSKM
CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCEEECCHHHHHHHH
WSYKDHGKSYDAVYHREHAPGFRWLHERFGTNWRMMEMQAVIGRIQLKRLPEWTVRRQEN
HCHHHCCCCCCHHHCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHH
AAKLAESLGKFKSIRLIEVADYIEHAQYKFYAFVKPEHLKDGWTRDRIVNELNVRKVPCY
HHHHHHHHHHHHCEEEEHHHHHHHHCCEEEEEEECCHHHCCCCHHHHHHHHCCCEECCCC
QGSCSEVYLEKAFDNTPWRPKERLKNAVELGNTSLMFLVHPTLTDDEIAFCKKHIEAVLA
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
EATQ
HCCC
>Mature Secondary Structure 
TTPAARARFFGTRPLQTAEMRKCRLKTDGQTIMLNTALSPWPCFTQEEADAVSKVLLSN
CCCHHHHHHCCCCCCCHHHHHHHEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
KVNYWTGNECREFEKEFAAFAGTRYAVALSNGTLALDVALKAIGIGAGNDVIVTSRTFLA
CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHCCCCCCCEEEECHHHHH
SASCIVNAGANPVFADVDLNSQNISAETVKAALTPNTKAIIVVHLAGMPAEMDGIMALAK
CCCEEEECCCCCEEEEEECCCCCCCHHHEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH
EHDLWVIEDCAQAHGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKELWSKM
CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCEEECCHHHHHHHH
WSYKDHGKSYDAVYHREHAPGFRWLHERFGTNWRMMEMQAVIGRIQLKRLPEWTVRRQEN
HCHHHCCCCCCHHHCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHH
AAKLAESLGKFKSIRLIEVADYIEHAQYKFYAFVKPEHLKDGWTRDRIVNELNVRKVPCY
HHHHHHHHHHHHCEEEEHHHHHHHHCCEEEEEEECCHHHCCCCHHHHHHHHCCCEECCCC
QGSCSEVYLEKAFDNTPWRPKERLKNAVELGNTSLMFLVHPTLTDDEIAFCKKHIEAVLA
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
EATQ
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]