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The map label for this gene is orn [H]

Identifier: 161869352

GI number: 161869352

Start: 359929

End: 360492

Strand: Reverse

Name: orn [H]

Synonym: NMCC_0358

Alternate gene names: 161869352

Gene position: 360492-359929 (Counterclockwise)

Preceding gene: 161869353

Following gene: 161869349

Centisome position: 16.74

GC content: 53.19

Gene sequence:

>564_bases
GTGCAGGATAAAAACAACCTCTGCTGGCTCGATATGGAAATGACGGGGCTTAATCCCGAAACCGACCGCATTATCGAAGT
CGCGATGATTATTACCGACTCGGATTTGAATGTATTGGCGCAATCCGAAGTTTACGCCGTCCACCAAAGTGACGAGCTGC
TCGACAATATGGACGAGTGGAACACCGCCACACACGGCAGGACGGGGCTGACGCAGCGCGTACGCGAATCGTCGCATACC
GAAGCCGAAGTCGAACAGAAACTGCTGGACTTTATGTCGGAATGGGTACCCGAACGCACCACGCCGATGTGCGGCAATTC
CATCCACCAAGACCGGCGTTTTATGGTCAAATATATGCCGAAACTGGAAAACTACTTCCACTACCGCAACCTCGACGTTT
CCACGCTCAAAGAGCTTGCCAAACGCTGGAATCCGCCCGTTGCCAAAAGCGTGGTCAAACGCGGTTCGCACAAGGCATTG
GACGACATTTTGGAGAGCATCGAAGAAATGCGCCACTACCGCGAACACTTTCTGATTTCCGCCCCGAGAGCCGAAGCGCA
ATAA

Upstream 100 bases:

>100_bases
GCGGCATTTACAGCCAATGGTTCGACCTCGACCCTGCGGAAACCGAAGAAGGATGGGCGCGATTGAGCGGCGTAAAACGC
TGAAACGGAAAGGAAACACC

Downstream 100 bases:

>100_bases
GAAACAAAAAATGCCGTCTGAAGCGCAAATCCTGCATTTCAGACGGCATTTTTACAGCAGATTGAAATCAAAAATATACA
CGCCCGTCATTCCCGCGCAG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTGLTQRVRESSHT
EAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKAL
DDILESIEEMRHYREHFLISAPRAEAQ

Sequences:

>Translated_187_residues
MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTGLTQRVRESSHT
EAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKAL
DDILESIEEMRHYREHFLISAPRAEAQ
>Mature_187_residues
MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTGLTQRVRESSHT
EAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKAL
DDILESIEEMRHYREHFLISAPRAEAQ

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=46.8208092485549, Blast_Score=174, Evalue=4e-44,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=56.8181818181818, Blast_Score=230, Evalue=6e-62,
Organism=Caenorhabditis elegans, GI17557752, Length=175, Percent_Identity=42.2857142857143, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6323088, Length=181, Percent_Identity=38.121546961326, Blast_Score=133, Evalue=2e-32,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=42.5287356321839, Blast_Score=165, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 21877; Mature: 21877

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEW
CCCCCCEEEEEEEECCCCCCHHHHHHHHHEEECCCCCHHHHHHHHEECCHHHHHHHHHHH
NTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMP
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
KLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKALDDILESIEEMRHYREHFLIS
HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEE
APRAEAQ
CCCCCCC
>Mature Secondary Structure
MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEW
CCCCCCEEEEEEEECCCCCCHHHHHHHHHEEECCCCCHHHHHHHHEECCHHHHHHHHHHH
NTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERTTPMCGNSIHQDRRFMVKYMP
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
KLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKALDDILESIEEMRHYREHFLIS
HHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEE
APRAEAQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA