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The map label for this gene is rfbC2 [H]

Identifier: 161869099

GI number: 161869099

Start: 87462

End: 88001

Strand: Direct

Name: rfbC2 [H]

Synonym: NMCC_0089

Alternate gene names: 161869099

Gene position: 87462-88001 (Clockwise)

Preceding gene: 161869098

Following gene: 161869100

Centisome position: 4.06

GC content: 54.81

Gene sequence:

>540_bases
ATGAACATCATTGATACCGCCATTCCTGACGTAAAACTGCTTGAGCCCCAAGTCTTCGGCGACGCGCGCGGCTTTTTTAT
GGAAACCTTCCGCGACGAGTGGTTTAAAACCCAAGTCTGCGAACGCACCTTCGTGCAGGAAAACCACTCCAAATCCGGCA
AAGGCGTATTGCGCGGCCTGCACTATCAAACCGAAAACACACAAGGCAAACTCGTACGCGTGGTTGTCGGCGAAGTATTC
GACGTGGCCGTCGATATGCGCGAAGGTTCGCCGACTTTCGGCAAATGGGCGGGCGCAACCCTGTCCGCGCAAAACCAATG
CCAGCTTTGGATACCCGAAGGCTTCGCGCACGGGTTTTGCGTTTTGGGCGACGCGGCGGAAGTCGTGTACAAATGCACCG
ACTATTACAAGCCTGAAGCCGAACAGGTTTTAATATGGAACGACCCGACAGTCGGCATAGGCTGGCCGTTGCAAGGCGAG
CCGAACCTGTCGCCTAAAGACTTGGCCGGCAAAGTATTGGCTGAAGCGGTCACGTTTTAA

Upstream 100 bases:

>100_bases
CGAAAAACCAATACGGCCAATATTTGCTGCGCCTGTTGAAAAAATAATGTTTGAGGCCGTCTGAAACTTTTCAGACGGCC
TTTAGCTGAAAGATAAAAAG

Downstream 100 bases:

>100_bases
GACTATTCAGGCCGTCTGAAAGAATGTTCCTCTTTTCAGACGGCCTACAATCTATTAATAACAATAATCGACGAAAACGC
ATTGTGAAAAACGCCTACAT

Product: dTDP-D-glucose 4,6-dehydratase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVF
DVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE
PNLSPKDLAGKVLAEAVTF

Sequences:

>Translated_179_residues
MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVF
DVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE
PNLSPKDLAGKVLAEAVTF
>Mature_179_residues
MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVF
DVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGE
PNLSPKDLAGKVLAEAVTF

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=169, Percent_Identity=56.2130177514793, Blast_Score=186, Evalue=8e-49,
Organism=Caenorhabditis elegans, GI17550412, Length=154, Percent_Identity=47.4025974025974, Blast_Score=141, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 19931; Mature: 19931

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGKGVLRGL
CCCCCCCCCCCEEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHE
HYQTENTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFC
EECCCCCCCCEEEEHHHHHHHHEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCEE
VLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGEPNLSPKDLAGKVLAEAVTF
EECCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGKGVLRGL
CCCCCCCCCCCEEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHE
HYQTENTQGKLVRVVVGEVFDVAVDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFC
EECCCCCCCCEEEEHHHHHHHHEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCEE
VLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQGEPNLSPKDLAGKVLAEAVTF
EECCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7961452; 8655518 [H]