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The map label for this gene is ycgR1 [H]

Identifier: 161526180

GI number: 161526180

Start: 3293695

End: 3294450

Strand: Reverse

Name: ycgR1 [H]

Synonym: Bmul_3011

Alternate gene names: 161526180

Gene position: 3294450-3293695 (Counterclockwise)

Preceding gene: 161526181

Following gene: 161526179

Centisome position: 95.53

GC content: 69.71

Gene sequence:

>756_bases
ATGAATATCGAAACGTCGACGGCCCCGAGCCTGGACTCGGGCCACTCCGGCCCCGACTATGCCCGCCGCAATCCGCTGGA
AATCGGCGTCCAGTTGCGCAATCTCGTGAACCGCGGCGATTTCCTGACCGTCGAGTATCCGGGCGGCCAGCTCGTCACGC
GTCTGCTGGAAGTCGATGTCGGCGCACGCACGTTCACGTTCGACTGGGGCGCGCTGTCCAAGCAGAACGCGAGCATCCTC
GGCGCGGCGCACTGCGCGTTTTCGGCCGCGCCCGAAGGCGTGCGCGTCGAGTTCACGACCGGCACGCCGCGCGAGACGCG
CTACGAGGGGCTGCCGGCGTTCGTCGCCGATTTCCCCGACGTGCTGGTCTGCATCCAGCGGCGCGAGTATTTCCGCGTCG
ACGCGCCGGTCGTCGATCCGTTCCTGTGCCGCGGCGCGCTGCCGGACGGCGAGCGCTTCCAGTTCGAGGTGCACAACCTG
TCGCTCGGCGGCGTCGGGCTGCGCACGGCCGACGAACGCGTCGAGGCGCTCGCGCTCGGCACGGTGCTGCCGGACGTCGA
GCTCGAGCTGAACGGGCACGGCAAGCTGTCGCTCGACCTGCAGCTCGTGTCGCAGCGCGCGACGCAGCTGCCGAACGGCG
CGCGCCGCTATCAGCTCGGCTTTCGCTTCCTGTCGCTGCCGGGCAGCGCCGAAAACACGCTGCAGCGGCTGATCACGCAG
CTCGAGATGAAGCGCCGCTCGCTCGCGCGCGCGTGA

Upstream 100 bases:

>100_bases
CCGCTAAGTGTGAGAGACCTGCGTCCGGGCCCCGTATTCTGGCCCGGTTTTATCGCGCGCGCGTTTCGCGTGCGCCCATG
ACAAGAAAGACCGGCTAGCC

Downstream 100 bases:

>100_bases
CGCAGCGCGCCGCGACGGCGCGCGGCACGCTCGCCGGCGTCGTTTCGGACAGCGCCGGCGCCCGATGCGCGACATGCGCG
CCGGGCGGCCATTTTTCCCT

Product: YcgR family protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNIETSTAPSLDSGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVEYPGGQLVTRLLEVDVGARTFTFDWGALSKQNASIL
GAAHCAFSAAPEGVRVEFTTGTPRETRYEGLPAFVADFPDVLVCIQRREYFRVDAPVVDPFLCRGALPDGERFQFEVHNL
SLGGVGLRTADERVEALALGTVLPDVELELNGHGKLSLDLQLVSQRATQLPNGARRYQLGFRFLSLPGSAENTLQRLITQ
LEMKRRSLARA

Sequences:

>Translated_251_residues
MNIETSTAPSLDSGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVEYPGGQLVTRLLEVDVGARTFTFDWGALSKQNASIL
GAAHCAFSAAPEGVRVEFTTGTPRETRYEGLPAFVADFPDVLVCIQRREYFRVDAPVVDPFLCRGALPDGERFQFEVHNL
SLGGVGLRTADERVEALALGTVLPDVELELNGHGKLSLDLQLVSQRATQLPNGARRYQLGFRFLSLPGSAENTLQRLITQ
LEMKRRSLARA
>Mature_251_residues
MNIETSTAPSLDSGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVEYPGGQLVTRLLEVDVGARTFTFDWGALSKQNASIL
GAAHCAFSAAPEGVRVEFTTGTPRETRYEGLPAFVADFPDVLVCIQRREYFRVDAPVVDPFLCRGALPDGERFQFEVHNL
SLGGVGLRTADERVEALALGTVLPDVELELNGHGKLSLDLQLVSQRATQLPNGARRYQLGFRFLSLPGSAENTLQRLITQ
LEMKRRSLARA

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=240, Percent_Identity=31.25, Blast_Score=130, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27595; Mature: 27595

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIETSTAPSLDSGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVEYPGGQLVTRLLEVDV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
GARTFTFDWGALSKQNASILGAAHCAFSAAPEGVRVEFTTGTPRETRYEGLPAFVADFPD
CCEEEEEECCCCCCCCCCEEEHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHCCHH
VLVCIQRREYFRVDAPVVDPFLCRGALPDGERFQFEVHNLSLGGVGLRTADERVEALALG
HHHHHHCCCEEEECCCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH
TVLPDVELELNGHGKLSLDLQLVSQRATQLPNGARRYQLGFRFLSLPGSAENTLQRLITQ
HHCCCEEEEECCCCEEEEHHHHHHHHHHHCCCCCCEEEECEEEEECCCCHHHHHHHHHHH
LEMKRRSLARA
HHHHHHHHCCC
>Mature Secondary Structure
MNIETSTAPSLDSGHSGPDYARRNPLEIGVQLRNLVNRGDFLTVEYPGGQLVTRLLEVDV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
GARTFTFDWGALSKQNASILGAAHCAFSAAPEGVRVEFTTGTPRETRYEGLPAFVADFPD
CCEEEEEECCCCCCCCCCEEEHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHCCHH
VLVCIQRREYFRVDAPVVDPFLCRGALPDGERFQFEVHNLSLGGVGLRTADERVEALALG
HHHHHHCCCEEEECCCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH
TVLPDVELELNGHGKLSLDLQLVSQRATQLPNGARRYQLGFRFLSLPGSAENTLQRLITQ
HHCCCEEEEECCCCEEEEHHHHHHHHHHHCCCCCCEEEECEEEEECCCCHHHHHHHHHHH
LEMKRRSLARA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA