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The map label for this gene is yggS [H]

Identifier: 161525824

GI number: 161525824

Start: 2898171

End: 2898878

Strand: Direct

Name: yggS [H]

Synonym: Bmul_2655

Alternate gene names: 161525824

Gene position: 2898171-2898878 (Clockwise)

Preceding gene: 161525823

Following gene: 161525825

Centisome position: 84.04

GC content: 70.48

Gene sequence:

>708_bases
GTGCCCGTCATGTCCGATCTCGCCGTTCGTCTCGAATCCGTTCATCGCCGCATCGCCGACGCCGCGCGTGCCGCCGGCCG
CGATCCGGCCTCCGTGTCGCTGCTCGCCGTATCGAAGACCTTTCCCGCCGATGCGGTGCGCGCCGCGCATGCGGCCGGGC
AGCGCGCATTCGGCGAAAACTACGTGCAGGAGTCGATCGACAAGATCGACGCGCTCGCCGATTTGCGCGCGTCGCTCGAA
TGGCATTTCATCGGGCCGCTGCAATCGAACAAGACGCGCGCGGTCGCCGAGCGCTACGACTGGGTGCATTCGGTCGACCG
GCTGAAGATCGCGCAGCGGCTCGCCGAGCAACGCCCCGCGCACCTGCCGCCGCTGAACGTATGCGTGCAGGTGAACATCA
GCGGCGAGGCGTCGAAGAGCGGCGTCGCGCCGGCCGAGGTCGCCGAGGTCGCACGCGCGGTGGCTGCGCTGCCGTCGCTG
CGGCTGCGCGGGCTGATGGCGATCCCCGAACCGGCGGCCGATCTCGACGCGCAACGCGTGCCGCATCGCGCACTGCGCAC
GCTGTTCGATGCGCTGCGTGCCGACGGCCTGGCGCTCGACACGCTCTCGATGGGCATGTCCGCCGATCTCGAGGCGGCCG
TGCTCGAAGGCGCGACGATCGTGCGCGTCGGCACCGCCATCTTCGGCGCGCGCGACTATTCGCGCTGA

Upstream 100 bases:

>100_bases
CGAGCGCGTCGCGGCGGCGCGCGCCGCGTCCGTATAATGTGCGGATCGTTGCGCCGCCTGCGGCGCATCCGCTCCGTGCC
CGTTTTCTCGCGCCGTATCC

Downstream 100 bases:

>100_bases
ACGCCGCGCCCTATCCCTTCACTCACTCGCTCAATCCGACATCATGAAAATCGCATTCATCGGCGGCGGCAACATGGCCG
CGGCCCTGATCGGCGGCCTC

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPVMSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLE
WHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSL
RLRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYSR

Sequences:

>Translated_235_residues
MPVMSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLE
WHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSL
RLRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYSR
>Mature_234_residues
PVMSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW
HFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLR
LRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYSR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=41.0041841004184, Blast_Score=137, Evalue=9e-33,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=57.5107296137339, Blast_Score=262, Evalue=1e-71,
Organism=Caenorhabditis elegans, GI17533025, Length=228, Percent_Identity=36.4035087719298, Blast_Score=123, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6319435, Length=240, Percent_Identity=36.25, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI45550861, Length=214, Percent_Identity=39.2523364485981, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25153; Mature: 25022

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVMSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGEN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
YVQESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPA
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HLPPLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRV
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHC
PHRALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYSR
CHHHHHHHHHHHHCCCCEEHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCC
>Mature Secondary Structure 
PVMSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGEN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
YVQESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPA
HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HLPPLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRV
CCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHC
PHRALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYSR
CHHHHHHHHHHHHCCCCEEHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]