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The map label for this gene is yhjC [H]

Identifier: 161525726

GI number: 161525726

Start: 2783676

End: 2784659

Strand: Direct

Name: yhjC [H]

Synonym: Bmul_2557

Alternate gene names: 161525726

Gene position: 2783676-2784659 (Clockwise)

Preceding gene: 161525724

Following gene: 161525727

Centisome position: 80.72

GC content: 69.41

Gene sequence:

>984_bases
ATGAACCAGATTCAGACCATGCGTGTCTTCGTCTGCGTCGCCGAGCATCAGAGCTTCCGGCGTGCGGCGCATCATCTCGG
CGTGTCCAATGCACTCGTCACGCGTTCGATCGCGATGCTCGAGAGCCATCTCAATACGCGGCTGATCCACCGCACCACGC
GCAATCTGTCGCTGACCGAAGCCGGCGTGCGCTATCTCGACGGCTGCCGCGCGCTGCTCGAGGAATTCGATCATCTCGAG
GCGTCGGTCGCGCAGGCCACGCACGAGCCGGGCGGCACGCTGCGCGTGGTCGCGTCGGGGCTGCTGTCGCCCGTCGCGCT
GACGCCGCTGCTCGGCCGGTTCCGGCATCGCTATCCGGAATTGCGCGTGCAAATGACGATCGCCGAGGCGCCGCTCGACG
TGCTCGATGCCGGCTACGACGTCGGCATCGTCACCGGCGACCGCTTCGACGGCAACCCGGCGCTGATCGCGCAGGCGCTC
GCGCCGAATCCGTTCGTCGCATGCGCATCGCCCGCGTATCTCGAACGGCGCGGCGAGCCGCGCACGCCCGACGATCTGCC
GCGCCACGATTGGGTCGCGCTCGCGCCGCATCAGCATCCGGGCGCATGGCGGCTGGTCGGCCCCGACGCGCGCGTGCATA
CGGTCACCGTGCGGCCCGCCTGCACGGTCAATCAGCTCGCGCTCGTCCATGCGGCGACGGTCGCGGGCTCGGGCATCGCG
ATGCTGCCCGAGCACTGCGTCGCCGACGCGATCGACAGCGGTACGCTCGTGCGGTTGCTGCCCGGCTACCGGATCGACGA
TCCGCATACACAGCTCTCGCTCGTCTATCCGAACCGGCAGTTCGTGCCGGCACGCACGCGCAGCTTCGTCGAACATGCGA
TCGAGCACTTCAGCACGCTCGCGCAGCCCGAGCGGGCGGGCTACGGTTTCCTGCGCGCGGCGCATGCGTCCGCGCATGCC
GACGGCGTGCCGGGCCTGCAGTAA

Upstream 100 bases:

>100_bases
CGATACGAGCGGGAATCACGCGCCGCGCAATGTTTTTTCCGCGCTGCACGATGAAAAATCACAACCATAATCAGTCAACC
GGGCCAAAAATACGCAAGCC

Downstream 100 bases:

>100_bases
ACTGCGGGCGACGACGCTCCCCGGAGAAACAGCGTGCGCGTGATCCTGTTCAGCAGCCGACAGTACGACGACGATTCGTT
CACCGCCGCCAACCGCCGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNQIQTMRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGVRYLDGCRALLEEFDHLE
ASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPELRVQMTIAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQAL
APNPFVACASPAYLERRGEPRTPDDLPRHDWVALAPHQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAATVAGSGIA
MLPEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAIEHFSTLAQPERAGYGFLRAAHASAHA
DGVPGLQ

Sequences:

>Translated_327_residues
MNQIQTMRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGVRYLDGCRALLEEFDHLE
ASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPELRVQMTIAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQAL
APNPFVACASPAYLERRGEPRTPDDLPRHDWVALAPHQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAATVAGSGIA
MLPEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAIEHFSTLAQPERAGYGFLRAAHASAHA
DGVPGLQ
>Mature_327_residues
MNQIQTMRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTEAGVRYLDGCRALLEEFDHLE
ASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPELRVQMTIAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQAL
APNPFVACASPAYLERRGEPRTPDDLPRHDWVALAPHQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAATVAGSGIA
MLPEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAIEHFSTLAQPERAGYGFLRAAHASAHA
DGVPGLQ

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=33.4470989761092, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=31.8791946308725, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=31.7567567567568, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=30.4195804195804, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=30.2013422818792, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=30.6338028169014, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=29.2307692307692, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=27.843137254902, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786713, Length=314, Percent_Identity=28.343949044586, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI145693105, Length=210, Percent_Identity=29.0476190476191, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082132, Length=252, Percent_Identity=25.7936507936508, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788706, Length=186, Percent_Identity=27.9569892473118, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788481, Length=256, Percent_Identity=24.609375, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=170, Percent_Identity=30, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=24.7524752475248, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35607; Mature: 35607

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50931 HTH_LYSR ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQIQTMRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTE
CCCHHEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AGVRYLDGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LRVQMTIAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERRGEP
EEEEEEEECCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEECCCHHHHHCCCC
RTPDDLPRHDWVALAPHQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAATVAGSGIA
CCCCCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHH
MLPEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAIEHFSTL
HCHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
AQPERAGYGFLRAAHASAHADGVPGLQ
CCCHHCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNQIQTMRVFVCVAEHQSFRRAAHHLGVSNALVTRSIAMLESHLNTRLIHRTTRNLSLTE
CCCHHEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AGVRYLDGCRALLEEFDHLEASVAQATHEPGGTLRVVASGLLSPVALTPLLGRFRHRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LRVQMTIAEAPLDVLDAGYDVGIVTGDRFDGNPALIAQALAPNPFVACASPAYLERRGEP
EEEEEEEECCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEECCCHHHHHCCCC
RTPDDLPRHDWVALAPHQHPGAWRLVGPDARVHTVTVRPACTVNQLALVHAATVAGSGIA
CCCCCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHH
MLPEHCVADAIDSGTLVRLLPGYRIDDPHTQLSLVYPNRQFVPARTRSFVEHAIEHFSTL
HCHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
AQPERAGYGFLRAAHASAHADGVPGLQ
CCCHHCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]