Click here to switch to the map view.

The map label for this gene is pocR [H]

Identifier: 161525724

GI number: 161525724

Start: 2780770

End: 2781705

Strand: Direct

Name: pocR [H]

Synonym: Bmul_2555

Alternate gene names: 161525724

Gene position: 2780770-2781705 (Clockwise)

Preceding gene: 161525722

Following gene: 161525726

Centisome position: 80.64

GC content: 71.79

Gene sequence:

>936_bases
ATGAACGCGTCCCTGTCCGCCCCGCCCGTCGATCGCGCCGCCGCCCTGTCCGGCGGCGATCTGCCGTTCGGCCTGCAATC
GGTGTGCCGCACGCTCGCCGACGCGAACGCGACGCTCGAGCGCTTCGCCTGGCTCGGCGACCACCTCGCGATCGCCGAGT
GGACGCGGATCACCGACGAGAGCGAGACGGTCTACGCGCAACCCGGCCATCACACGCTGTCGTGCTACCTCGACGGCGGC
TACCGGACCGAGCGCGAACGCGTGCCGCGCTACGGCGCGCCGAGCCTGCTGTGCGCGCTGCCGGGCGACCACGAATCGCG
CTGGTGGGTGCGCGGCGAGATGCATTTCGTCCACCTGTACTTCCTGCCCGAGCACTTCACGCAACGCGCGATCCGCGAGC
TCGATCGCGAACCGCGCGAACTGAAGCTCGCCGATCGGACCTATTTCGAGGAAGCGCGCGTCGCGTCGCTGCTGCGCTCG
GTCGCGCTCGAGCGCTGGGACGATGCGGACGGTCGCCTGCGCGTGAACGAAACGGCGCACGACGTGCTGAGCCTGCTGCT
GCGCGAACAGAGCGCGACGCGCACCGACACGCCGTTTCGCGGCGGTCTCGCGCCGGCCGTGCGGCGCCGCGTGCGCGACT
ACATCGACGCGCATCTGTCGCAGCCGCTGACGCTCGGCGAACTCGCGGAGGTCGCCGCGCTGTCCGAATACCATTTCTCG
CGGATGTTCCGGCTGTCGTTCGGCCGCGCGCCACATGCGTGGGTCGCTGAGCAGCGGCTCGCCCGCGCGCGCCTGCTGCT
GCGCACGACGTCGCTGCCGCTCGCGCAGATCGCGGCCGACTGCGGCTATGCGAACGCGGCGCACTTCAGCCACCGCTTTC
GCGACGCGCACGGCGCGGCGCCGAACGCGTACCGGCGCGCGATCCAGGGCCGCTGA

Upstream 100 bases:

>100_bases
TCCGACTATGCCGTCGCACGACGCGTGCCGATTGTCCGGAATTGCGGTCTTTTTCGCCGGCGCCCGCGCGCCGGCATGCG
CGCGCTTATACTCGGACCTC

Downstream 100 bases:

>100_bases
GCGGCCGCGCCGCGCGCCGCGTTACGCGCCGCGCCGCGACAGTTCCTGCTCGAGTGCCGCGACGCCGGCCGGCAGATCGA
CGGGCACCTTCAGGTCGACC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNASLSAPPVDRAAALSGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDESETVYAQPGHHTLSCYLDGG
YRTERERVPRYGAPSLLCALPGDHESRWWVRGEMHFVHLYFLPEHFTQRAIRELDREPRELKLADRTYFEEARVASLLRS
VALERWDDADGRLRVNETAHDVLSLLLREQSATRTDTPFRGGLAPAVRRRVRDYIDAHLSQPLTLGELAEVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARLLLRTTSLPLAQIAADCGYANAAHFSHRFRDAHGAAPNAYRRAIQGR

Sequences:

>Translated_311_residues
MNASLSAPPVDRAAALSGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDESETVYAQPGHHTLSCYLDGG
YRTERERVPRYGAPSLLCALPGDHESRWWVRGEMHFVHLYFLPEHFTQRAIRELDREPRELKLADRTYFEEARVASLLRS
VALERWDDADGRLRVNETAHDVLSLLLREQSATRTDTPFRGGLAPAVRRRVRDYIDAHLSQPLTLGELAEVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARLLLRTTSLPLAQIAADCGYANAAHFSHRFRDAHGAAPNAYRRAIQGR
>Mature_311_residues
MNASLSAPPVDRAAALSGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDESETVYAQPGHHTLSCYLDGG
YRTERERVPRYGAPSLLCALPGDHESRWWVRGEMHFVHLYFLPEHFTQRAIRELDREPRELKLADRTYFEEARVASLLRS
VALERWDDADGRLRVNETAHDVLSLLLREQSATRTDTPFRGGLAPAVRRRVRDYIDAHLSQPLTLGELAEVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARLLLRTTSLPLAQIAADCGYANAAHFSHRFRDAHGAAPNAYRRAIQGR

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=129, Percent_Identity=31.0077519379845, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790497, Length=92, Percent_Identity=34.7826086956522, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35134; Mature: 35134

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASLSAPPVDRAAALSGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDE
CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCC
SETVYAQPGHHTLSCYLDGGYRTERERVPRYGAPSLLCALPGDHESRWWVRGEMHFVHLY
CCEEEECCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEEE
FLPEHFTQRAIRELDREPRELKLADRTYFEEARVASLLRSVALERWDDADGRLRVNETAH
ECCHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
DVLSLLLREQSATRTDTPFRGGLAPAVRRRVRDYIDAHLSQPLTLGELAEVAALSEYHFS
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RMFRLSFGRAPHAWVAEQRLARARLLLRTTSLPLAQIAADCGYANAAHFSHRFRDAHGAA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCC
PNAYRRAIQGR
CHHHHHHHCCC
>Mature Secondary Structure
MNASLSAPPVDRAAALSGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRITDE
CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCC
SETVYAQPGHHTLSCYLDGGYRTERERVPRYGAPSLLCALPGDHESRWWVRGEMHFVHLY
CCEEEECCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEEE
FLPEHFTQRAIRELDREPRELKLADRTYFEEARVASLLRSVALERWDDADGRLRVNETAH
ECCHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
DVLSLLLREQSATRTDTPFRGGLAPAVRRRVRDYIDAHLSQPLTLGELAEVAALSEYHFS
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RMFRLSFGRAPHAWVAEQRLARARLLLRTTSLPLAQIAADCGYANAAHFSHRFRDAHGAA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCC
PNAYRRAIQGR
CHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]