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The map label for this gene is rarA [H]

Identifier: 161525591

GI number: 161525591

Start: 2632977

End: 2634287

Strand: Reverse

Name: rarA [H]

Synonym: Bmul_2421

Alternate gene names: 161525591

Gene position: 2634287-2632977 (Counterclockwise)

Preceding gene: 161525592

Following gene: 161525589

Centisome position: 76.39

GC content: 66.51

Gene sequence:

>1311_bases
ATGTCCGACCTGTTTCAAGTCGAGCCGCGCCGTCCGCTCGCCGAGGCGCTGCGGCCGAAAACGCTCGCCGACGTGATCGG
CCAGACGCATTTGCTCGGCGAAGGCAAGCCGCTGCGGCTCGCGTTCGAATCCGGCAAGCCGCATTCGATGATCCTCTGGG
GGCCGCCCGGCGTCGGCAAGACGACGCTCGCACGGCTCACCGCGCTCGCATTCGACTGCGAGTTCATCGCGCTGTCCGCG
GTGCTCGGCGGCGTGAAGGACATCCGCGAGGCGATGGATCAGGCGAAGGAGACGCTGAACCGCACGGGCCGCCACACGAT
CCTGTTTGTCGACGAAATCCACCGCTTCAACAAAGGGCAGCAGGACGCGCTGCTGCCGTTCGTCGAGTCGGGGCTCGTCA
CGTTCATCGGCGCGACCACCGAGAATCCGAGCTTCGAGGTCAACTCCGCACTGCTGTCGCGTGCGCAGGTGTACGTGCTG
AAATCGTTGACCGACGACGAAATGCGGCAGCTGCTCAAGCGCGCGCAGCATATCGCGCTCGACGGCCTCGAGTTCGACGA
CAAGGCGGTCGATACGCTGATCGGCTATGCGGACGGCGACGCGCGGCGCTTTCTGAACCTGCTCGAGCAGGCGCAGACGG
CCGCGTCCTCGGCCGGCGTGACGACGATCGATGCGGACTTCGTCGGCAGCGCGATGACGCTGAATGCGCGCCGCTTCGAC
AAGGGCGGCGACAACTTCTACGACCAGATCTCGGCGCTGCACAAGTCGGTGCGCGGGTCGAGCCCGGACGGCGCGTTGTA
CTGGTTCTGCCGGATGGTCGACGGCGGCGCCGATCCGAAGTACCTCGCGCGCCGGATCGTGCGCATGGCATGGGAAGACA
TCGGGCTTGCCGATCCGCGCGCGATGCAGATCGCGAACGACGCGGCCGAGACGTACGAGCGGCTCGGCTCGCCGGAAGGC
GAACTCGCGCTCGCGCAGGCCGTGATCTATCTCGCGTGCGCCGCGAAGAGCAATGCGGGCTACAACGCGTTCAACCAGGC
GATGGCGTTCGTGAAGCAGGACAAGTCGCGCGAGGTGCCCGTGCATCTGCGCAATGCGCCGACGAAGCTGATGAAGGAGC
TCGGCTACGGTCACGCGTATCGCTACGCGCACGACGAGCCGAACGCGTATGCGGCCGGCGAGACCTACCTGCCGGACGGC
ATGCGCGAGCCGCATTGGTACAAACCGGTGCCGCGCGGGCTCGAATCGAAGATCGCGGACAAGCTCGCATGGCTGCGCGA
GCTCGATCGCGAGGCCGGCAAGAAGGACTGA

Upstream 100 bases:

>100_bases
CGTGTCGTTTCCGGGCACGGCGGGCGCGTCGCGCGACTGTCATAATGTCGGGTCCGGCGGCCGCGTTCGGCCGCTACCGT
TTGTTGTGGAGCGAGGGTTC

Downstream 100 bases:

>100_bases
CGGCGCGGCGCGTCAGCGCTTGCGGTGGGGCTGCTTCGTCCAGTAACCGAACGGCTCCTCGTGGCAGTCGATGTCGAGTT
CGGCGACACGCGCGTGCAGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFQVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLTDDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTIDADFVGSAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMVDGGADPKYLARRIVRMAWEDIGLADPRAMQIANDAAETYERLGSPEG
ELALAQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPHWYKPVPRGLESKIADKLAWLRELDREAGKKD

Sequences:

>Translated_436_residues
MSDLFQVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLTDDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTIDADFVGSAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMVDGGADPKYLARRIVRMAWEDIGLADPRAMQIANDAAETYERLGSPEG
ELALAQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPHWYKPVPRGLESKIADKLAWLRELDREAGKKD
>Mature_435_residues
SDLFQVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAV
LGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
SLTDDEMRQLLKRAQHIALDGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTIDADFVGSAMTLNARRFDK
GGDNFYDQISALHKSVRGSSPDGALYWFCRMVDGGADPKYLARRIVRMAWEDIGLADPRAMQIANDAAETYERLGSPEGE
LALAQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
REPHWYKPVPRGLESKIADKLAWLRELDREAGKKD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=42.8571428571429, Blast_Score=318, Evalue=7e-87,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=39.1402714932127, Blast_Score=266, Evalue=3e-71,
Organism=Escherichia coli, GI1787119, Length=445, Percent_Identity=53.2584269662921, Blast_Score=455, Evalue=1e-129,
Organism=Escherichia coli, GI1786676, Length=278, Percent_Identity=29.4964028776978, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17541988, Length=208, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=409, Percent_Identity=41.5647921760391, Blast_Score=294, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48117; Mature: 47986

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFQVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCCHHHHHCCHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDDEMRQLLKRAQHIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
DGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTIDADFVGSAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCEEEECHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMVDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHEEEHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQIANDAAETYERLGSPEGELALAQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPHWYKPVPRGLESKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKKD
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFQVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHCCHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIREAMDQAKETLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLTDDEMRQLLKRAQHIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
DGLEFDDKAVDTLIGYADGDARRFLNLLEQAQTAASSAGVTTIDADFVGSAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCEEEECHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMVDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHEEEHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQIANDAAETYERLGSPEGELALAQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPHWYKPVPRGLESKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKKD
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]