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The map label for this gene is ydfH [H]

Identifier: 161525542

GI number: 161525542

Start: 2584499

End: 2585179

Strand: Direct

Name: ydfH [H]

Synonym: Bmul_2372

Alternate gene names: 161525542

Gene position: 2584499-2585179 (Clockwise)

Preceding gene: 161525539

Following gene: 161525543

Centisome position: 74.95

GC content: 70.48

Gene sequence:

>681_bases
ATGAATGCCCCGACCGACCGTCCGCGCGACCGCATCGATGCGAGCGCCACGAGCCTGGCCGAGCGCGCGTACGCGCTGAT
CCGGCGCGACATCGTCACGATGCGGCTGAAGCCCGGCGCCGCGCTGAACGAGGCGGACCTCGTCGCGCGCACCGGCATCG
GCCGCACGCCCGTCCATCAGGCCGTGCATCGGCTCGTGCTCGAAGGGCTGCTGTCCGTGATTCCGCGCAAGGGCTTGATG
GTGCAGCCGCTGTCGCTCGACGAGATCGTCGCCGTGATCGACGTGCGCCGCATCAACGAAGCGCATTGCGCGGAACTCGC
CGCGCGCCATGCGACGCCCGACGATCTCGCAGCGCTCGCCGCGCTGCTCGACGCAGGCCAGGCGTGCGCCGAGCAGCACG
ACGTCGAAGGGATGATGGAGCTCGACCGCGCGTTCCATCAGACGATCGCGGCGGCCGCGCGCAACGCGGTGCTCGCCGAC
ATCCTGCGCGGGCTGCACGATCGCTCGCTGCGCTTCTGGTTCGTCACGCTGTCCGAGCCGCACCATCTGGCCGACGTCCA
GCGCGAGCACCGCGCGCTGTTCGAGCGGCTGTCCGCGCGCGACGCCGCCGGTGCGCGTGCGGCGGTCGAACGTCATATCG
ATTCGTTCCGCTCCACGCTTGTCCAACATCTTCGCCCCTGA

Upstream 100 bases:

>100_bases
TGGACACATGTGATATATCACAATAATATCGACGCTTCGCCACGTTTCCGGGATCCCGCGCCATGACCGCGCCTCGTCCG
GCCGCCGCGCCGCCGTCCGC

Downstream 100 bases:

>100_bases
GCCGCTCATGACCACTTTCACGCCCTTCCCCCCGCTCGCCCAGCTCGCCGCCGATCTCGCCGCCGGCACGACCACGAGCC
GCGCGCTCGTCGACGCCGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNAPTDRPRDRIDASATSLAERAYALIRRDIVTMRLKPGAALNEADLVARTGIGRTPVHQAVHRLVLEGLLSVIPRKGLM
VQPLSLDEIVAVIDVRRINEAHCAELAARHATPDDLAALAALLDAGQACAEQHDVEGMMELDRAFHQTIAAAARNAVLAD
ILRGLHDRSLRFWFVTLSEPHHLADVQREHRALFERLSARDAAGARAAVERHIDSFRSTLVQHLRP

Sequences:

>Translated_226_residues
MNAPTDRPRDRIDASATSLAERAYALIRRDIVTMRLKPGAALNEADLVARTGIGRTPVHQAVHRLVLEGLLSVIPRKGLM
VQPLSLDEIVAVIDVRRINEAHCAELAARHATPDDLAALAALLDAGQACAEQHDVEGMMELDRAFHQTIAAAARNAVLAD
ILRGLHDRSLRFWFVTLSEPHHLADVQREHRALFERLSARDAAGARAAVERHIDSFRSTLVQHLRP
>Mature_226_residues
MNAPTDRPRDRIDASATSLAERAYALIRRDIVTMRLKPGAALNEADLVARTGIGRTPVHQAVHRLVLEGLLSVIPRKGLM
VQPLSLDEIVAVIDVRRINEAHCAELAARHATPDDLAALAALLDAGQACAEQHDVEGMMELDRAFHQTIAAAARNAVLAD
ILRGLHDRSLRFWFVTLSEPHHLADVQREHRALFERLSARDAAGARAAVERHIDSFRSTLVQHLRP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=207, Percent_Identity=26.5700483091787, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081914, Length=174, Percent_Identity=29.3103448275862, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082149, Length=199, Percent_Identity=27.6381909547739, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24926; Mature: 24926

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPTDRPRDRIDASATSLAERAYALIRRDIVTMRLKPGAALNEADLVARTGIGRTPVHQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCCCHHHH
AVHRLVLEGLLSVIPRKGLMVQPLSLDEIVAVIDVRRINEAHCAELAARHATPDDLAALA
HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
ALLDAGQACAEQHDVEGMMELDRAFHQTIAAAARNAVLADILRGLHDRSLRFWFVTLSEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCC
HHLADVQREHRALFERLSARDAAGARAAVERHIDSFRSTLVQHLRP
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAPTDRPRDRIDASATSLAERAYALIRRDIVTMRLKPGAALNEADLVARTGIGRTPVHQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCCCHHHH
AVHRLVLEGLLSVIPRKGLMVQPLSLDEIVAVIDVRRINEAHCAELAARHATPDDLAALA
HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
ALLDAGQACAEQHDVEGMMELDRAFHQTIAAAARNAVLADILRGLHDRSLRFWFVTLSEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCC
HHLADVQREHRALFERLSARDAAGARAAVERHIDSFRSTLVQHLRP
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]